PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0418s0029.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 223aa MW: 24478.1 Da PI: 8.0007

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0418s0029.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.7e-13	119	164	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W++eE++ ++++ k+lG g+W+ I++++ Rt+ q+ s+ qk+ Kaladp0418s0029.1.p 119 LPWSEEEHKSFLRGLKELGRGNWRGISKEFVRSRTPAQVASHAQKH 164 69******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.832	112	169	IPR017930	Myb domain
SuperFamily	SSF46689	2.62E-15	114	169	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-14	116	168	IPR006447	Myb domain, plants
SMART	SM00717	6.2E-10	117	167	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-10	119	164	IPR009057	Homeodomain-like
Pfam	PF00249	3.0E-11	120	164	IPR001005	SANT/Myb domain
CDD	cd00167	5.87E-10	120	165	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
METKDGYGGS EAADRLKPFD VEQRTNPEGD RLALTDRSVN LASAFSIGTD ECKESDHQFT 60 DGSIDVLAEG LAGKSRSCGT ADFYGGAAPG DRDGYFSDGS RHDKNVRPSA NHSRRNKGLP 120 WSEEEHKSFL RGLKELGRGN WRGISKEFVR SRTPAQVASH AQKHFIRQSA PPFKKRRNSL 180 FDIPLKESNV ETQEKSVAFQ PVHPPPSPVS PYEPCMIGCL ST*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022771480.1	2e-32	probable transcription factor At5g61620
Swissprot	Q7XC57	7e-31	MYBS3_ORYSJ; Transcription factor MYBS3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	3e-29	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kaladp0418s0029.1.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]