PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0278s0008.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 840aa    MW: 95852.6 Da    PI: 9.7493
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0278s0008.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.1e-07226269346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rWT  Ed+ l+  vk+  + +W  Ia  +g++Rt+ qc  r+q 
  Kaladp0278s0008.3.p 226 RWTRTEDKELLLIVKEKEMSNWIDIAVSLGTNRTPFQCLARFQR 269
                          9***************************************9995 PP
2Myb_DNA-binding35.52.2e-11278321246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            W +eEd +l  av+ +G  +W  +a+ +  +Rt+ qc +rw k
  Kaladp0278s0008.3.p 278 REWEEEEDARLCAAVRVFGESNWQMVASVLD-KRTGTQCSNRWKK 321
                          68*****************************.***********98 PP
3Myb_DNA-binding43.76.5e-14331375247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          grWT +Ed++ +  vk++G ++W++Ia+ ++ gRt  qc++rw + 
  Kaladp0278s0008.3.p 331 GRWTIDEDKRMKVSVKLFGAKCWSKIAQFVP-GRTQVQCRERWVNC 375
                          8******************************.***********986 PP
4Myb_DNA-binding42.71.3e-13384425346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +WT++Ed++l  a++++    W+++a++++  Rt++qc+ rw  
  Kaladp0278s0008.3.p 384 PWTEDEDLKLMTAITEYNYC-WSKVAACIP-PRTDNQCRRRWMV 425
                          8*****************99.*********.9**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-4122145IPR009057Homeodomain-like
PROSITE profilePS500905.331122218IPR017877Myb-like domain
SMARTSM007170.44123220IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-4193218IPR009057Homeodomain-like
SuperFamilySSF466896.88E-14201272IPR009057Homeodomain-like
PROSITE profilePS500908.362219271IPR017877Myb-like domain
SMARTSM007171.1E-4223273IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-11226279IPR009057Homeodomain-like
PfamPF139216.9E-11227288No hitNo description
SuperFamilySSF466892.21E-17256325IPR009057Homeodomain-like
PROSITE profilePS5129413.49272323IPR017930Myb domain
SMARTSM007171.4E-10276325IPR001005SANT/Myb domain
CDDcd001671.12E-8279323No hitNo description
Gene3DG3DSA:1.10.10.605.3E-15280326IPR009057Homeodomain-like
PROSITE profilePS5129419.779324380IPR017930Myb domain
SuperFamilySSF466896.24E-26327423IPR009057Homeodomain-like
SMARTSM007172.2E-10329378IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-18331381IPR009057Homeodomain-like
PfamPF002492.7E-12331375IPR001005SANT/Myb domain
CDDcd001671.30E-9332374No hitNo description
SMARTSM007178.0E-10381429IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-16382426IPR009057Homeodomain-like
PROSITE profilePS5129414.036383431IPR017930Myb domain
PfamPF002491.2E-11384424IPR001005SANT/Myb domain
CDDcd001676.74E-10384426No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MHEPTLLPVK GSGFPRPAQL LLDSIKKNRL CQKLIHNRLI QIEARIEESK KLKDRVKILK  60
DFQVSTRKRV GLVLSQKKDH RVQLISAPKR GEKKASAMKF GPEDNRDVAF YKDAITKFPL  120
ALQRQRWSNE ERDNLRKGIK QEFQKALLEK SVDLISYSEG SYGISSDIDN VMASIKGLEI  180
TPENIRAYLP KVNWDNFASI YHQGRSGAEC EARWLNWEDP LRNNTRWTRT EDKELLLIVK  240
EKEMSNWIDI AVSLGTNRTP FQCLARFQRS LNAQMVKREW EEEEDARLCA AVRVFGESNW  300
QMVASVLDKR TGTQCSNRWK KSLNPARVRV GRWTIDEDKR MKVSVKLFGA KCWSKIAQFV  360
PGRTQVQCRE RWVNCLDPSL NWDPWTEDED LKLMTAITEY NYCWSKVAAC IPPRTDNQCR  420
RRWMVLCPDD VYRLQAAKKI QQVALISNFV DRETERPDLG PEDFVPPLIL CPAFEPYSEE  480
PTNKRKRKRR EKRASPMNNA EYNMGCSDSQ KKKRCPRRRK EAQVDNEATL GAVDVNEATE  540
AVICLNEYVD TGDEGKCGRS NYLKRKKYKP RRKARAENVP VQSKAFLPAA QSESMLMNHS  600
FSHEIPVENN TTSTQKRRTT IKQNKKKSCS IYKKNDYEFA AGTLSLQMQT PDKSASIPGA  660
IVATSKSCKR ERVTASSSLK DAVSFHRPSS CSCCLESIVC HQGAVNGTRV NGELIAGKAA  720
ACLEENDFIP LASLGKRDKN FSQNEAEYAQ EANSRSEMNN KFCCEQPATS LGEDDSLALT  780
SFIKRKRNVC NARIENGHNV DKGRKMEIIS VEQVGAGLNE DDIPLALFIK KVKRVKEKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-282254232151MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-282254232151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1483489KRKRKRR
2484489RKRKRR
3484492RKRKRREKR
4486491RKRREK
5515519PRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278062.20.0PREDICTED: snRNA-activating protein complex subunit 4 isoform X2
TrEMBLA0A068TQ560.0A0A068TQ56_COFCA; Uncharacterized protein
TrEMBLA0A2G9HYB10.0A0A2G9HYB1_9LAMI; Uncharacterized protein
STRINGXP_010243797.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-158myb domain protein 4r1