PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0262s0019.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 428aa    MW: 46035.1 Da    PI: 9.7302
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0262s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-1661105147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
  Kaladp0262s0019.1.p  61 REKWTEEEHQKFIEALKLYGRA-WRQIEEYIG-TKTAVQIRSHAQKF 105
                          789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-1555111IPR009057Homeodomain-like
PROSITE profilePS5129421.44756110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-958111IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1659108IPR006447Myb domain, plants
SMARTSM007172.9E-1360108IPR001005SANT/Myb domain
PfamPF002495.8E-1461104IPR001005SANT/Myb domain
CDDcd001671.97E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MQVDPAMAPL QIPTAGSKSP GTSIASGNNS QNILNANCET DLDGSGVALK VRKPYTISKQ  60
REKWTEEEHQ KFIEALKLYG RAWRQIEEYI GTKTAVQIRS HAQKFFSKVT KESASSGEAP  120
TEAIDIPPPR PKRKPLHPYP RKFVEAPNKT RQGPSLKENG SSTISKNLET GALSPTSVLS  180
PEVAHISTSH AKAQGSGSVS ATSSGSHSSS VLEKSNPIKN NSTPIKEKDL LRTLNLSGPS  240
SHDSTSVQTR KKFKDIELTK DEGVYSEAET KFFGGVSPLK AIKLFGQTVV VTKPLDLSLG  300
MKNVVMPTAT RGPLMCCVSH MDSLVGSQPY DSSPDGQLVT GGILMGERSR EKGGSKGFSV  360
NGLISDAISK AYNEETNQDS VDSKIRSSEG PILSPSEGRK GFVPYKRCVS EREAVLQMNK  420
ADCRVCL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.13e-35circadian clock associated 1