PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0262s0013.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 428aa MW: 46104.2 Da PI: 9.5422

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0262s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5e-15	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a k++G W+ I +++g ++t+ q++s+ qk+ Kaladp0262s0013.1.p 55 REKWTEKEHQKFIEALKLYGRA-WRQIEEYIG-TKTAVQIRSHAQKF 99 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.4E-15	49	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.38	50	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-9	52	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-16	53	102	IPR006447	Myb domain, plants
SMART	SM00717	3.8E-12	54	102	IPR001005	SANT/Myb domain
Pfam	PF00249	6.4E-13	55	98	IPR001005	SANT/Myb domain
CDD	cd00167	2.12E-9	57	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MAPLQIPTAG SKSPVTSIAS GNNSQNILNA NCETDLDGSG VALKVRKPYT ISKQREKWTE 60 KEHQKFIEAL KLYGRAWRQI EEYIGTKTAV QIRSHAQKFF SKVTKESASS AEAPTEAIDI 120 PPPRPKRKPL HPYPRKFVEA PNKTIQGPSL KENGLSTISK SLEGGALSPT SVLSPEVAHM 180 STSHAKAQGS GSVSATSSGS HSSGVLEKSN PIKNNSTPIK EKDLLRTLNF SGPSSHDSTS 240 VQTRKEFKDI VLTKDEDVYS EAETKFFGGV SPLKAIKLFG QTVVVTKPSD LSLGMENVVM 300 PTATRGLLMC CVSHMDSLVG SQPYDSSPEL SLRLDGQLVT GCILMGERSR EKGGSKGFSV 360 NGSNNDAISK AYNAETNQDS VDSKIRSSEG PILSPSEGRK GFVPYKRCVS EREAVLQMNK 420 ADCRVCL*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MAPLQIPTAG SKSPVTSIAS GNNSQNILNA NCETDLDGSG VALKVRKPYT ISKQREKWTE  60
KEHQKFIEAL KLYGRAWRQI EEYIGTKTAV QIRSHAQKFF SKVTKESASS AEAPTEAIDI  120
PPPRPKRKPL HPYPRKFVEA PNKTIQGPSL KENGLSTISK SLEGGALSPT SVLSPEVAHM  180
STSHAKAQGS GSVSATSSGS HSSGVLEKSN PIKNNSTPIK EKDLLRTLNF SGPSSHDSTS  240
VQTRKEFKDI VLTKDEDVYS EAETKFFGGV SPLKAIKLFG QTVVVTKPSD LSLGMENVVM  300
PTATRGLLMC CVSHMDSLVG SQPYDSSPEL SLRLDGQLVT GCILMGERSR EKGGSKGFSV  360
NGSNNDAISK AYNAETNQDS VDSKIRSSEG PILSPSEGRK GFVPYKRCVS EREAVLQMNK  420
ADCRVCL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	2e-33	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kaladp0262s0013.1.p