PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0255s0012.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 361aa    MW: 40420.6 Da    PI: 7.1941
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0255s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.55.7e-391513054132
                  TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssa..sec...eaesss 79 
                           k rhski T++g+RdRR+Rls+++a+rfF Lqd+LGfdk+s t+eWLl +++ +i + +g          +s     s c   e++s++
  Kaladp0255s0012.1.p 151 TKGRHSKIDTAQGPRDRRMRLSLDIARRFFGLQDMLGFDKASRTVEWLLSKSQFEINKVAGRkdndafnsaKS--DsfSPCecgEEVSEV 238
                          588***********************************************************88887765422..234555446666666 PP

                  TCP  80 ssasnsssg.............kaaksaa..kskksqksaasalnlak.esrakarararertrekmri 132
                           +++n s++             + ++++   k + +++++  +++la+ esr+karararert+ek++i
  Kaladp0255s0012.1.p 239 DNKDNLSQSgamdtdketkksrS-KEKKIrgKVSVPSRKNG-FNHLANkESREKARARARERTKEKKMI 305
                          66664444477888888877542.22222123333333333.4444445*****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.664151209IPR017887Transcription factor TCP subgroup
PfamPF036346.6E-42151304IPR005333Transcription factor, TCP
PROSITE profilePS5137012.397285302IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MFPTPDNNDS NSFAVPYSDH QYLFYSKLLD DVHIDNNYQN PACSPFSSFG LHFHADPPPP  60
FLYSSDHHEH PLQIQDNPGE EQLPRVTIHQ EFITAASSSS SARGYCTADE NFLQSGFAGD  120
GDPTDGIGGT SAVRPVKQHD DTVRNNGILL TKGRHSKIDT AQGPRDRRMR LSLDIARRFF  180
GLQDMLGFDK ASRTVEWLLS KSQFEINKVA GRKDNDAFNS AKSDSFSPCE CGEEVSEVDN  240
KDNLSQSGAM DTDKETKKSR SKEKKIRGKV SVPSRKNGFN HLANKESREK ARARARERTK  300
EKKMICHSQS YSKQQQFLNP EPHTYSYVDQ GHMMTDQDGS LANSTCWNPS STCTTIVNRL  360
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-23TCP domain protein 12