PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0254s0009.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 552aa    MW: 61153.7 Da    PI: 6.4278
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0254s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.51.9e-211182202100
                          EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           k+lt+sd+++ g ++ p+++ae++       + ++ +   lt++d +g  W +++i+r++++r++lt+GW++Fv+ + L +gD v+F++
  Kaladp0254s0009.1.p 118 TKILTQSDANNGGGFSAPRHCAESIfpalnyqEDPPVQ--NLTITDVQGGDWIFRHIFRGTPKRHLLTTGWSKFVNNKMLVAGDAVIFMR 205
                          699**************************996666656..69999********************************************6 PP

                          -SSSEE..EEEEE-SS CS
                   B3  85 dgrsefelvvkvfrks 100
                          d+  +++l+++++r+s
  Kaladp0254s0009.1.p 206 DN-LTGKLYIGIRRHS 220
                          54.9999******985 PP
2Auxin_resp63.48.6e-22261344283
           Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgv.sdldpvrWpnSkWrsLk 83 
                          a  a  +s Fev+ +Pr ++++Fvv+++ v +al+ +++vGm +km + tedss+  l +G v+ v + l+  +W++S+W++L+
  Kaladp0254s0009.1.p 261 AMHAGRGSHFEVILYPRIGSPDFVVNANVVDRALSWRWAVGMGVKMTVATEDSSQSMLlQGHVSVVmNVLERGQWRGSPWKMLQ 344
                          56677899***********************************************9999**998772557889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.27E-24114220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-29116224IPR015300DNA-binding pseudobarrel domain
CDDcd100173.73E-18116218No hitNo description
SMARTSM010195.1E-15117220IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843117220IPR003340B3 DNA binding domain
PfamPF023621.1E-18118219IPR003340B3 DNA binding domain
PfamPF065073.2E-19261344IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MFPINFPAAN TVQIDPDLWK ACAGANFKVP SVDDNVYYFA EGHAEQCDSP PPVAEFAFPI  60
IPCRVLHVRF FADRMTDEVF ASVLLQPVGC EFRGALPASG SALGAQVGRE GSRIDSYTKI  120
LTQSDANNGG GFSAPRHCAE SIFPALNYQE DPPVQNLTIT DVQGGDWIFR HIFRGTPKRH  180
LLTTGWSKFV NNKMLVAGDA VIFMRDNLTG KLYIGIRRHS GRNENRSLLS GAGQGTGEDV  240
DEGLWRAGSR GVSARFVKEA AMHAGRGSHF EVILYPRIGS PDFVVNANVV DRALSWRWAV  300
GMGVKMTVAT EDSSQSMLLQ GHVSVVMNVL ERGQWRGSPW KMLQVTWVDP EHRQNVERVS  360
PWQVEYVEHT APLQPIHNPI ELRDPHVQPL TTRNREPLLI MGQEPHSTKA QGDQRTRNFI  420
NPDIHLASMQ GARHLSDVCD LIGGDTHQTQ SEDMFSRSDM SLFRSRITDV NFRGHQLSNF  480
PAERHNSMRS FGTEVGNTLP NGGTNSIQLF GKIIYVKNPI ENQPDDAPCL EFDSSKGDNE  540
AEGMENQSHA S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A5e-571736522353Auxin response factor 1
4ldw_A5e-571736522353Auxin response factor 1
4ldw_B5e-571736522353Auxin response factor 1
4ldx_A5e-571736522353Auxin response factor 1
4ldx_B5e-571736522353Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-111auxin response factor 17