PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 201aa MW: 23032.2 Da PI: 4.9542

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0102s0161.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.2	5.3e-31	137	195	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YY+C+ ++Cpvkk+ver++edp++v++tYeg H+h Kaladp0102s0161.1.p 137 LDDGYKWRKYGKKMVKNSPNPRNYYKCSVEKCPVKKRVERDREDPRYVITTYEGVHTHM 195 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.1E-33	123	197	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-28	130	197	IPR003657	WRKY domain
PROSITE profile	PS50811	30.446	132	197	IPR003657	WRKY domain
SMART	SM00774	3.1E-35	137	196	IPR003657	WRKY domain
Pfam	PF03106	3.6E-24	138	194	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGVLYIHTHI YIYVRASVEP FDQGMDGNSG DYQYQSMYNS FGYLDFGEAS HANFGNNDFL 60 PDYLLDDWFN QSDEPAVTGV ELGQRDPVYQ MSEVNGVDGN YYAQNEETDT RESGSSTGRA 120 QGKEKFAFKT KSEIDTLDDG YKWRKYGKKM VKNSPNPRNY YKCSVEKCPV KKRVERDRED 180 PRYVITTYEG VHTHMSPSGY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-24	127	198	7	78	Probable WRKY transcription factor 4
2lex_A	2e-24	127	198	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022997285.1	4e-50	probable WRKY transcription factor 50 isoform X1
Swissprot	Q8VWQ5	7e-39	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A3R5T0G4	6e-51	A0A3R5T0G4_PAELC; WRKY protein
STRING	XP_008445519.1	3e-48	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	3e-41	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	Kaladp0102s0161.1.p

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]