PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0102s0139.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 253aa MW: 27535.4 Da PI: 9.7331 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 5.7e-14 | 102 | 145 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT++E+ +++ + ++lG+g+W+ I++++ Rt+ q+ s+ qky Kaladp0102s0139.1.p 102 WTEDEHRKFLAGLEKLGKGDWRGISKHFVPSRTPTQVASHAQKY 145 *****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-12 | 94 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.686 | 94 | 150 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-18 | 95 | 151 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-17 | 97 | 149 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.1E-11 | 98 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.01E-11 | 102 | 146 | No hit | No description |
Pfam | PF00249 | 1.3E-11 | 102 | 145 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAKACSYCGS MGHNSRTCVT YNKNTLVAPR LKLFGVQLDA PIASSSTMKK SCSVGCFSPS 60 VSLSSCTLPN ASLPRNSSIL PTGYLSDDHN GHPKTRKKGV LWTEDEHRKF LAGLEKLGKG 120 DWRGISKHFV PSRTPTQVAS HAQKYFLRQH NLSKKRKGPS LCSPQTEDFS KTVWLKYASS 180 YYSEAFCGRS SYLPSPMTNL LVANWLYNSS GLSTYPKCKH LSKPATVEAE PNLDLTIAAP 240 PQSESTCGCL GT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018845997.1 | 1e-53 | PREDICTED: myb-like protein J | ||||
Swissprot | Q7XC57 | 3e-40 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A2I4GQ25 | 2e-52 | A0A2I4GQ25_JUGRE; myb-like protein J | ||||
STRING | EOY30492 | 1e-48 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 1e-39 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0102s0139.1.p |
Publications ? help Back to Top | |||
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