PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0102s0056.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 395aa    MW: 44674.1 Da    PI: 9.64
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0102s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.4e-14571231787
                          E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           lp++f e++g k ++   ++l+ ++g +W+v++  +k+s++++l++GW +F+++ g+k g f+vF +d  
  Kaladp0102s0056.1.p  57 KLPRRFGERCGAKVPG--NVRLQVPTGATWRVEV--KKNSNGVWLGEGWFKFAESLGVKYGHFLVFDYDAV 123
                          59********888666..6***************..*******************************9864 PP
2B371.97.9e-23295386699
                          ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +p  + ++++l +p +f+e++ +  k   k+ tl++ +gr+W+vk++  +++ r ++t+GW +Fv++ngLk+gD+++F+l++  e   +v
  Kaladp0102s0056.1.p 295 SPDGTARECQLLVPMPFIEAYfN-LKI--KDATLRTDDGRKWSVKYRLARYRPRSYFTSGWTQFVRDNGLKAGDVCLFELIRGAENAIKV 381
                          55566788*************53.433..489****************99999999*************************986666899 PP

                          EEE-S CS
                   B3  95 kvfrk 99 
                           +fr+
  Kaladp0102s0056.1.p 382 VIFRA 386
                          88885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.1841135IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-1541134IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-548135IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-1551132IPR015300DNA-binding pseudobarrel domain
PfamPF023628.1E-1257125IPR003340B3 DNA binding domain
CDDcd100176.66E-1358129No hitNo description
Gene3DG3DSA:2.40.330.105.4E-22274385IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-23288385No hitNo description
SMARTSM010192.5E-17290387IPR003340B3 DNA binding domain
PROSITE profilePS5086315.552290387IPR003340B3 DNA binding domain
PfamPF023625.5E-21296386IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-20300385IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MKFFRIVTAD ITTRSKLVRT AKASPSLFMR SYLNNHTSSL LLFFLFEIVA MLFYLQKLPR  60
RFGERCGAKV PGNVRLQVPT GATWRVEVKK NSNGVWLGEG WFKFAESLGV KYGHFLVFDY  120
DAVRAVFHVV AIGMSAVETE YPTVSSIDDD DDQSGRNPRL SNLKRRKIEK DDDDDDDDVV  180
ILKDDANLGR SKPQKCQAPG KKAKASKCEV DQSMCGNGSV RSDDGDLTTT KKRGKFEREI  240
ILNRERMIQC IVQGRGRNNR ANDQAEKAIE RAKSFKADEP VCIIALSPCY VTRESPDGTA  300
RECQLLVPMP FIEAYFNLKI KDATLRTDDG RKWSVKYRLA RYRPRSYFTS GWTQFVRDNG  360
LKAGDVCLFE LIRGAENAIK VVIFRAISED EAVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-23B3 family protein