PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0102s0049.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 248aa    MW: 28585.9 Da    PI: 9.5018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0102s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-182067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd+ll + v+q+G g+W++++r  g++R +k+c++rw +yl
  Kaladp0102s0049.1.p 20 KGPWTAEEDKLLTEHVTQHGEGRWNSVSRLTGLKRNGKSCRLRWVNYL 67
                         79******************************9*************97 PP
2Myb_DNA-binding51.91.7e-1673117147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Kaladp0102s0049.1.p  73 RGQITPHEETIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117
                          7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2681567IPR017930Myb domain
SuperFamilySSF466897.86E-3017114IPR009057Homeodomain-like
SMARTSM007176.8E-151969IPR001005SANT/Myb domain
PfamPF002491.7E-152067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-232174IPR009057Homeodomain-like
CDDcd001671.57E-102267No hitNo description
PROSITE profilePS5129422.92268122IPR017930Myb domain
SMARTSM007171.6E-1472120IPR001005SANT/Myb domain
PfamPF002498.0E-1473117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2475121IPR009057Homeodomain-like
CDDcd001675.83E-1077118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVWGGVMAAA WGYADEGWRK GPWTAEEDKL LTEHVTQHGE GRWNSVSRLT GLKRNGKSCR  60
LRWVNYLRPD LKRGQITPHE ETIILELHAR WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK  120
KGTKAASHSA EKAKTRLLRR QQFQQQQQIQ QQQQQQQQYQ QQQQIFSQVE TKASTNGCAE  180
KTAPYPYWPQ QMLNLPDSTY LNVNSDQGFF YAMLNDNSNV DGLVPEPAAN NESAALWDGL  240
WNLDDVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-272012127127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021807006.16e-93myb-related protein 305-like
TrEMBLA0A498HIJ54e-88A0A498HIJ5_MALDO; Uncharacterized protein
TrEMBLA0A498I8B26e-88A0A498I8B2_MALDO; Uncharacterized protein
STRINGXP_008366333.12e-88(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-75myb domain protein 305