PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0101s0274.23.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 348aa    MW: 39071.5 Da    PI: 5.7364
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0101s0274.23.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.4e-142367348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           WT+eEd++l + ++ +G+++W+ +a+++   +t  qc+ rw++yl
  Kaladp0101s0274.23.p 23 VWTQEEDDILREQIRIYGTDNWAIVASEFS-DKTTRQCRRRWYTYL 67
                          6*****************************.*************97 PP
2Myb_DNA-binding44.92.6e-1473116146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g WT+eEd ll +  +++G++ W+ Ia+++  gRt++ +k+r+ +
  Kaladp0101s0274.23.p  73 KGGWTPEEDALLCESQRKYGNK-WTEIAKMVS-GRTDNAVKNRFST 116
                           688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6621667IPR017930Myb domain
SMARTSM007179.3E-142069IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-2620114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-202475IPR009057Homeodomain-like
PfamPF139211.5E-152484No hitNo description
CDDcd001673.07E-132467No hitNo description
PROSITE profilePS5129421.65168122IPR017930Myb domain
SMARTSM007171.1E-1472120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2076121IPR009057Homeodomain-like
CDDcd001671.24E-1076117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MKKRSDSNST EGANKLKERH IVVWTQEEDD ILREQIRIYG TDNWAIVASE FSDKTTRQCR  60
RRWYTYLNSD FKKGGWTPEE DALLCESQRK YGNKWTEIAK MVSGRTDNAV KNRFSTLCKK  120
KAKREALAEE DSTSLSSVGK KRAWLKNQPH KTGTEENQVP YKKIRRIRIS VPAESCNRGK  180
LIPGDYPLGE HTQIIPDLCE ESSGSSDYST GSTLLSHVTE GTPTNQTMDI SELNQDSGSE  240
IRISLGQKES EESMTIFGSL SYQDGFQSSQ EPTSEEVFSA ESAVEFGSPL QVIPLFPDES  300
AELPSPVFSE SERNFLIKAL GMETPHHPGT DQPQPQPVCK RVLLHSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-272412210108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606218.11e-101transcription factor MYB88-like
TrEMBLA0A2C9WM652e-99A0A2C9WM65_MANES; Uncharacterized protein
STRINGMigut.K00887.1.p9e-82(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.25e-60MYB family protein