PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0101s0274.22.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 349aa    MW: 39158.6 Da    PI: 5.7364
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0101s0274.22.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.65.9e-132368348
                          SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           WT+eEd++l + ++ +G++ +W+ +a+++   +t  qc+ rw++yl
  Kaladp0101s0274.22.p 23 VWTQEEDDILREQIRIYGTDnSWAIVASEFS-DKTTRQCRRRWYTYL 68
                          6******************************.*************97 PP
2Myb_DNA-binding44.92.6e-1474117146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g WT+eEd ll +  +++G++ W+ Ia+++  gRt++ +k+r+ +
  Kaladp0101s0274.22.p  74 KGGWTPEEDALLCESQRKYGNK-WTEIAKMVS-GRTDNAVKNRFST 117
                           688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3561668IPR017930Myb domain
SMARTSM007171.1E-122070IPR001005SANT/Myb domain
PfamPF139213.8E-152485No hitNo description
CDDcd001671.35E-112468No hitNo description
Gene3DG3DSA:1.10.10.602.1E-192476IPR009057Homeodomain-like
SuperFamilySSF466894.12E-2648129IPR009057Homeodomain-like
PROSITE profilePS5129421.65169123IPR017930Myb domain
SMARTSM007171.1E-1473121IPR001005SANT/Myb domain
CDDcd001671.19E-1077118No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2077122IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKKRSDSNST EGANKLKERH IVVWTQEEDD ILREQIRIYG TDNSWAIVAS EFSDKTTRQC  60
RRRWYTYLNS DFKKGGWTPE EDALLCESQR KYGNKWTEIA KMVSGRTDNA VKNRFSTLCK  120
KKAKREALAE EDSTSLSSVG KKRAWLKNQP HKTGTEENQV PYKKIRRIRI SVPAESCNRG  180
KLIPGDYPLG EHTQIIPDLC EESSGSSDYS TGSTLLSHVT EGTPTNQTMD ISELNQDSGS  240
EIRISLGQKE SEESMTIFGS LSYQDGFQSS QEPTSEEVFS AESAVEFGSP LQVIPLFPDE  300
SAELPSPVFS ESERNFLIKA LGMETPHHPG TDQPQPQPVC KRVLLHSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-252412310108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606218.12e-99transcription factor MYB88-like
TrEMBLA0A2C9WM651e-97A0A2C9WM65_MANES; Uncharacterized protein
STRINGMigut.K00887.1.p5e-80(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.23e-58MYB family protein