 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Kaladp0101s0204.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
HB-other |
| Protein Properties |
Length: 469aa MW: 50691.4 Da PI: 4.8767 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0101s0204.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 19.7 | 1.4e-06 | 13 | 75 | 6 | 56 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
+ft++++ e+e+ + n+ p +e LA+k ++ +qV +WFqN+R+ +k
Kaladp0101s0204.1.p 13 RFTPSEVAEMEAILSEhnNKLPPRELFVTLADKFsngperigkiTVQMKQVWNWFQNKRYAMK 75
589999999999998655888999999999999999999999889999***********9888 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 469 aa
Download sequence Send
to blast |
MGRPPGNGGP AFRFTPSEVA EMEAILSEHN NKLPPRELFV TLADKFSNGP ERIGKITVQM 60
KQVWNWFQNK RYAMKAKSNK SQAAKLDVAP LQAVPPLAPA ALAPALQSVP PVRQEVNGKA 120
PNNMEFEARS ARDGAWYDVA AFLSVRNKDT DDPEVLVRFV GLTPEEDEWI KVSKHVRHRS 180
LPCEASECVA VLPGDLILCF QEAPEQALYF DAHVLDAQRM KHDSRGCRCS FMVRYDHDQF 240
EEVVPLRKIC RRPETDYRLQ IYQALPDLPA QQKKIVQSSA CSAPLEDNPV AESVQMPAQK 300
VDDNTAPASS APSSPVAREK NTAGSLEEGN PGHVTADNAS KLTRKAEESV DQDAETKRPR 360
PSDHTENPVG QDASTPAVMP ESDKQDETQG VADSAVEQKG SSPRQQDPAG PCAVVKEKEA 420
VSNDVAEVDD GDPNPGGGAL TCQNQTNGHT GGSGGGSSDV AVGVQQCF*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 2e-42 | 123 | 254 | 3 | 134 | SHH1 SAWADEE |
| 4iur_B | 2e-42 | 123 | 254 | 3 | 134 | SHH1 SAWADEE |
| 4iut_A | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.1 | 1e-112 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
