PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0101s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 623aa MW: 68653.3 Da PI: 4.8445 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.7 | 1.3e-05 | 433 | 466 | 17 | 55 |
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++f+ L++l+P+ K++K++ L ++ Y+k+L+ Kaladp0101s0080.1.p 433 DERFSALQSLVPSH-----DKVDKVMLLDATISYLKELE 466 589**********7.....7****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.2E-52 | 7 | 190 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 9.324 | 416 | 465 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0013 | 423 | 471 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-8 | 432 | 477 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.37E-5 | 432 | 469 | No hit | No description |
SuperFamily | SSF47459 | 4.97E-8 | 432 | 482 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MYAFENLRKQ LALAVRCYQW SYAIFWSVSI TQPSVLEWGS GYYNGDIKTR KTSQSEELNA 60 DLIDSQRSDQ LRELYESLAA GDSNSQARRP SAALSPEDLS DTEWYYLVCM SFVFNIGQGL 120 PGRTFEVGQP IWLCNAHIAD SKAYTRSLLA KSASVQTVVC FPCLGGVVEM GVTEQVPEDM 180 NLIVRIKASF LDDFLPQPNV PNISLPSAIL NNDMELPGIE LDNDYLDANL DPIIECDELD 240 SLSTDDSASK VAPDQVDDSY MVTGGASQVQ SWHFVDEEFS NCVRNSFNTS DCISQTFELS 300 AKAKLPSKIE AHRIPCPAEC TKLESLDVRS DDLHYQSVVS TLLKSSDQLV LGPHLGCCIK 360 GTSFVKWSRV GLSGASSLSD SRSQVMLKKA LFDVGRMHSG GTAVDCTEVL DRYNVPKISR 420 DESDREHLPD VLDERFSALQ SLVPSHDKVD KVMLLDATIS YLKELEKRVV KLESSKEPAP 480 LPVTSIPTKS QDDVERTSDN YGTNRTSSES NPSTNKRKAS HINQTDLQAT SKTSRDSSTD 540 HICVSIVDNN VMIEMRCCWR ECLLLKVLDA IGSLSLDSHS VQSSTAANGI LQLTIKSKFK 600 GSGCPSVGVI RRKLQRILAQ SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-15 | 20 | 190 | 24 | 192 | Transcription factor MYC3 |
4rqw_B | 4e-15 | 20 | 190 | 24 | 192 | Transcription factor MYC3 |
4rru_A | 6e-15 | 8 | 186 | 51 | 227 | Transcription factor MYC3 |
4rs9_A | 4e-15 | 20 | 190 | 24 | 192 | Transcription factor MYC3 |
4ywc_A | 6e-15 | 8 | 186 | 51 | 227 | Transcription factor MYC3 |
4ywc_B | 6e-15 | 8 | 186 | 51 | 227 | Transcription factor MYC3 |
4yz6_A | 4e-15 | 20 | 190 | 24 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007040249.2 | 0.0 | PREDICTED: transcription factor EGL1 | ||||
TrEMBL | A0A061GCJ1 | 0.0 | A0A061GCJ1_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 | ||||
STRING | EOY24750 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 1e-159 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0101s0080.1.p |