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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Kaladp0100s0035.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 238aa MW: 27526.3 Da PI: 9.7057 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0100s0035.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 89.6 | 1.6e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvt+skRrng++KKAeEL vLCda+v++i++sst+k++ey+s
Kaladp0100s0035.1.p 9 KRIENTTNRQVTYSKRRNGLFKKAEELTVLCDAKVSIIMISSTQKIHEYIS 59
79***********************************************86 PP
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| 2 | K-box | 90.6 | 2.9e-30 | 71 | 168 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90
yqk+s+++++++++e++++ l+k+k+ ++ L++e+R+++Ge+L++Ls++eL+ Leq+++++++ iR++K++ + + +++l+kk ++++e+
Kaladp0100s0035.1.p 71 YQKASNTDVWSKQYERMEETLRKVKEMNKRLRTEIRQRMGECLNDLSFEELRGLEQDMDNAVTAIRARKYKAIGSRTDTLRKKVRNVEEI 160
8999************************************************************************************** PP
K-box 91 nkaLrkkl 98
++L+++l
Kaladp0100s0035.1.p 161 YRKLNQEL 168
****9986 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.3E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 30.754 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.20E-37 | 2 | 80 | No hit | No description |
| SuperFamily | SSF55455 | 3.14E-34 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.2E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.7E-19 | 81 | 168 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.795 | 84 | 174 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MARGKIQIKR IENTTNRQVT YSKRRNGLFK KAEELTVLCD AKVSIIMISS TQKIHEYISP 60
GITTKQVVDL YQKASNTDVW SKQYERMEET LRKVKEMNKR LRTEIRQRMG ECLNDLSFEE 120
LRGLEQDMDN AVTAIRARKY KAIGSRTDTL RKKVRNVEEI YRKLNQELVS PQPHFEYNRE 180
AREEDRHYGL VDNNNSGDYE SVIALGPRVF ALHLNPNQSA NMQTCAGGSD LTYTLMN*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ479359 | 0.0 | DQ479359.1 Kalanchoe blossfeldiana APETALA3-like protein (AP3-1) mRNA, partial cds. |
| Publications
? help Back to Top |
- Schwarz-Sommer Z, et al.
Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
EMBO J., 1992. 11(1): p. 251-63
[PMID:1346760] - Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Nature, 2007. 449(7161): p. 463-7
[PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
Plant Physiol., 2009. 149(1): p. 354-69
[PMID:18997115] - Sommer H, et al.
Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
EMBO J., 1990. 9(3): p. 605-13
[PMID:1968830] - Gallois JL, et al.
Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
Gene, 2013. 526(2): p. 299-308
[PMID:23747397] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine.
BMC Genomics, 2016. 17: p. 80
[PMID:26818751] - Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
Multiple interactions amongst floral homeotic MADS box proteins.
EMBO J., 1996. 15(16): p. 4330-43
[PMID:8861961]
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