PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0099s0036.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 80aa    MW: 9082.48 Da    PI: 9.8389
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0099s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52.1e-10350347
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                         +WT  E +l+ +a + +  +   +W++ a  +g+++t+ q+k+++ k+
  Kaladp0099s0036.1.p  3 SWTSKENKLFENALQIYTEDtpeRWEKLAGALGNTKTAQQVKLHYEKL 50
                         6********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.4E-5153IPR001005SANT/Myb domain
PROSITE profilePS512939.473155IPR017884SANT domain
PfamPF002492.8E-8350IPR001005SANT/Myb domain
CDDcd001673.99E-5351No hitNo description
SuperFamilySSF466891.08E-11358IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-5351IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MASWTSKENK LFENALQIYT EDTPERWEKL AGALGNTKTA QQVKLHYEKL VEDIMAIERG  60
AIPLPKYKKN PSKSNRMMA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-184681174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022869684.12e-28protein RADIALIS-like 3
SwissprotQ1A1733e-21RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A444YWT78e-24A0A444YWT7_ARAHY; Uncharacterized protein
STRINGXP_009586717.14e-24(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-23RAD-like 6