PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0099s0035.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 107aa MW: 11681.7 Da PI: 4.4751 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.4 | 5.8e-12 | 14 | 64 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 r WT eEd l+ da++++ + +W+ + r+mg +t +++++++q + Kaladp0099s0035.1.p 14 RTTWTREEDVLFEDAFALYHNQdpstRWENVVRHMGGSKTVEEVIHHYQLL 64 678*********************************99**********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.586 | 9 | 65 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.3E-6 | 13 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-9 | 14 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.88E-10 | 15 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-8 | 17 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MAGSTNSNSS SPSRTTWTRE EDVLFEDAFA LYHNQDPSTR WENVVRHMGG SKTVEEVIHH 60 YQLLVEDVNN IEAGRIALPA YGDGDTAEAL GGGGGLGYNL SYFFFH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423283.1 | 2e-20 | protein RADIALIS-like 3 | ||||
Refseq | XP_006469147.1 | 2e-20 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 1e-16 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A067E8G3 | 4e-19 | A0A067E8G3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PY89 | 4e-19 | A0A2H5PY89_CITUN; Uncharacterized protein | ||||
TrEMBL | V4RQ20 | 4e-19 | V4RQ20_9ROSI; Uncharacterized protein | ||||
STRING | XP_006469147.1 | 7e-20 | (Citrus sinensis) | ||||
STRING | XP_006423283.1 | 7e-20 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-16 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0099s0035.1.p |