PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kaladp0096s0137.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TALE

Protein Properties

Length: 646aa MW: 70929.4 Da PI: 7.5393

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0096s0137.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.1	1.8e-09	366	403	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++++ LAk+ gLt +qV++WF N R + Kaladp0096s0137.2.p 366 FEHflHPYPKDSDKQMLAKQAGLTRSQVSNWFINARVR 403 554459******************************88 PP
2	BELL	110.5	9.4e-36	230	300	1	71
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 er+e+q+kk kLl +l+eV+ rY+qy++q+q+vi+sFe++ag gsa+ Yt+lAl++iSr+FrcLkdai+ q Kaladp0096s0137.2.p 230 ERHEIQMKKGKLLCMLDEVELRYRQYQQQMQIVIASFEQAAGQGSARTYTALALRTISRQFRCLKDAIVVQ 300 79******************************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.1E-54	151	299	IPR006563	POX domain
Pfam	PF07526	8.1E-45	156	298	IPR006563	POX domain
PROSITE profile	PS50071	12.228	344	407	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.9E-28	346	421	IPR009057	Homeodomain-like
CDD	cd00086	1.07E-11	347	408	No hit	No description
SMART	SM00389	1.2E-8	347	411	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.69E-16	348	414	IPR009057	Homeodomain-like
Pfam	PF05920	8.5E-18	364	403	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MAAYFDGGNS QIQAADGLQT LIFMNPSYVN NHHHQNPNNF VFANPSMSPA TDQSQQLVGV 60 PLQQNQHPEP ISALHGLVPR PHYNLWTPIV RDNPRPQKGL SLSLSNSQQQ QQQQVGFAGT 120 PSSAISPSSG SKDDGIGTPS PASVISNGPA SGLRSVLLCS KYLKATQQLL EEVVNVGSAM 180 DSAKKKGTAT GSSSKAATEA SSPEAAAAAA VAVGDGENGV KKAAELSTVE RHEIQMKKGK 240 LLCMLDEVEL RYRQYQQQMQ IVIASFEQAA GQGSARTYTA LALRTISRQF RCLKDAIVVQ 300 MRAMSKSLGE EEDMDIKEGG SRLKFVDHHL RQQRALQQLG MIQHNAWRPQ RGLPERSVSV 360 LRAWLFEHFL HPYPKDSDKQ MLAKQAGLTR SQVSNWFINA RVRLWKPMVE EMYNEEVKEQ 420 ENHESTDKTG ISGNNNAEAY ASKVPTHDNI SFKNVSPEDT GATAAAKSDS VSPGRLRNQN 480 TGFSLVGSSE LEGISEMSPK RQRTNHLMIN PTDSFQSNME MKSIHASNEH VLMRFGIERQ 540 TRDDYSLMAA GPFGSCPMEE INQFDSSHQY QPRFSGNGGV SLTLGLTDTV FPNQNMRRMD 600 TGEATEFGTI NNNPNPARTT STAYESINIQ NPKRFPVQLL PDFVA*

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MAAYFDGGNS QIQAADGLQT LIFMNPSYVN NHHHQNPNNF VFANPSMSPA TDQSQQLVGV  60
PLQQNQHPEP ISALHGLVPR PHYNLWTPIV RDNPRPQKGL SLSLSNSQQQ QQQQVGFAGT  120
PSSAISPSSG SKDDGIGTPS PASVISNGPA SGLRSVLLCS KYLKATQQLL EEVVNVGSAM  180
DSAKKKGTAT GSSSKAATEA SSPEAAAAAA VAVGDGENGV KKAAELSTVE RHEIQMKKGK  240
LLCMLDEVEL RYRQYQQQMQ IVIASFEQAA GQGSARTYTA LALRTISRQF RCLKDAIVVQ  300
MRAMSKSLGE EEDMDIKEGG SRLKFVDHHL RQQRALQQLG MIQHNAWRPQ RGLPERSVSV  360
LRAWLFEHFL HPYPKDSDKQ MLAKQAGLTR SQVSNWFINA RVRLWKPMVE EMYNEEVKEQ  420
ENHESTDKTG ISGNNNAEAY ASKVPTHDNI SFKNVSPEDT GATAAAKSDS VSPGRLRNQN  480
TGFSLVGSSE LEGISEMSPK RQRTNHLMIN PTDSFQSNME MKSIHASNEH VLMRFGIERQ  540
TRDDYSLMAA GPFGSCPMEE INQFDSSHQY QPRFSGNGGV SLTLGLTDTV FPNQNMRRMD  600
TGEATEFGTI NNNPNPARTT STAYESINIQ NPKRFPVQLL PDFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-15	353	411	5	63	Homeobox protein Meis2
3k2a_B	1e-15	353	411	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU622857	0.0	EU622857.1 Kalanchoe x houghtonii BEL1 (Bel1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018809867.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018809868.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018809869.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018809870.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018809871.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-141	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	B2MV69	0.0	B2MV69_9MAGN; BEL1
STRING	EOY08486	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-126	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	Kaladp0096s0137.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]