PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0096s0027.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 110aa MW: 12752.7 Da PI: 9.9532 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.8e-15 | 58 | 102 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++++eE++l+ +++k+lG+ W++Ia +++ gRt++++k++w+ +l Kaladp0096s0027.1.p 58 GNMSEEEEDLIQRLHKLLGNI-WSLIAGRLP-GRTDNEIKNYWNLHL 102 789****************99.*********.***********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.728 | 1 | 51 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.71E-20 | 37 | 105 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-11 | 37 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.261 | 52 | 106 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-14 | 58 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.50E-11 | 59 | 102 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-19 | 64 | 103 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MAHFHFVRRH GQQPVVTFYI PWCFFCNADG APFAGLNRSG KSCRLRWLNY LKPDIKSGNM 60 SEEEEDLIQR LHKLLGNIWS LIAGRLPGRT DNEIKNYWNL HLKKRVLGD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-19 | 38 | 106 | 40 | 108 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008364573.2 | 3e-38 | transcription repressor MYB5-like | ||||
Refseq | XP_010261928.1 | 3e-38 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9S9K9 | 1e-34 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A199UZY2 | 2e-37 | A0A199UZY2_ANACO; Transcription factor TT2 | ||||
STRING | XP_008356551.1 | 1e-37 | (Malus domestica) | ||||
STRING | XP_008364573.1 | 1e-37 | (Malus domestica) | ||||
STRING | XP_010261928.1 | 1e-37 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-37 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0096s0027.1.p |