PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0096s0026.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 198aa MW: 22949.5 Da PI: 7.063 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.2e-16 | 48 | 92 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+ +++k+lG++ W++Ia +++ gRt++++k++w+ + Kaladp0096s0026.3.p 48 RGNMSEDEEDLIQRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNFH 92 89********************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.38E-20 | 26 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-10 | 27 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.379 | 28 | 42 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 22.81 | 43 | 97 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-15 | 47 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 48 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.57E-10 | 50 | 93 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-20 | 55 | 94 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MEIRRRSETG RICSKTRCQE MESNCRKNRS GKSCRLRWLN YLKPGIKRGN MSEDEEDLIQ 60 RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN FHLKTRVLGE TETNNIPSKH KTSRTSYYEK 120 EPTTSGNNNH ECHAGNPNAN QIDNECQAAG NLNANQINEA DNCFDWSPHI SDCSEWVNRL 180 LDLDVEQWLQ EDMDILN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-19 | 27 | 97 | 38 | 108 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 5e-36 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0096s0026.3.p |