PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0095s0571.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 396aa MW: 42809 Da PI: 7.3827 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.5 | 8.1e-41 | 77 | 198 | 2 | 95 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + Kaladp0095s0571.1.p 77 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsq 166 689******************************************************************999877777777775555555 PP TCP 89 .........................kaaksaa 95 ++++s++ Kaladp0095s0571.1.p 167 lrstyfnpnfsipqqrrtlfpglglSSNTSST 198 55566666666666666666666653333333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-41 | 81 | 242 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.923 | 83 | 137 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 396 aa Download sequence Send to blast |
MDGGGDDHHH YNHNSHHHIF QRSNNFPFQL LEKKEDDQSA ACSSSGYPPS NSLAIVSSAT 60 TEINPDPNQP DSTKKRPPKR TSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG 120 ETIEWLLQQA EPAVIAATGT GTIPANFTSL NISLRSSGSS MSVPSQLRST YFNPNFSIPQ 180 QRRTLFPGLG LSSNTSSTIL DFQSHHNNLG ILQQTKQELR DTTSSTLDLS EDDSSLGRKR 240 RTPEQDLPPS SSPQHQLNNY LLQSTSSGVI PANHGQIPGN IWMLTNPNHN QIENPIWTFP 300 PQVSSNSAAA AAAAAALYRG TMSSGLHFMN FPTPVALLGS GQGLGSGLSG LGPGNNSMNE 360 NHLNIFGGLN PYRSVSGSDN QGSGSQSHHE DERHD* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019464078.1 | 1e-143 | PREDICTED: transcription factor TCP14-like | ||||
Swissprot | Q93Z00 | 2e-56 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A4P1R2V5 | 1e-142 | A0A4P1R2V5_LUPAN; Uncharacterized protein | ||||
STRING | VIT_17s0000g06020.t01 | 1e-136 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47620.1 | 1e-43 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0095s0571.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|