PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kaladp0095s0501.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 798aa MW: 88800.6 Da PI: 5.3276

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0095s0501.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.7	1.6e-19	36	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia+++g gRt+ qc +rwqk+l Kaladp0095s0501.1.p 36 KGQWTAEEDETLRKAVEHYNGKSWKKIAECLG-GRTDVQCLHRWQKVL 82 799***************************.**********986 PP
2	Myb_DNA-binding	49.4	1.1e-15	88	134	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v + G W+ Ia+++ gR +kqc++rw+ +l Kaladp0095s0501.1.p 88 KGPWTKEEDKKIIELVGKNGATKWTNIAKHLT-GRIGKQCRERWYHHL 134 79***************************9.**********886 PP
3	Myb_DNA-binding	47.1	5.6e-15	140	182	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gR+++ +k++w+ Kaladp0095s0501.1.p 140 KENWTQEEELTLIHAHRIYGNK-WAELTKFLP-GRSDNAIKNHWN 182 679*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.277	31	82	IPR017930	Myb domain
SMART	SM00717	3.2E-16	35	84	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-17	36	82	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.16E-16	37	92	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-20	38	93	IPR009057	Homeodomain-like
CDD	cd00167	1.19E-14	39	82	No hit	No description
PROSITE profile	PS51294	28.119	83	138	IPR017930	Myb domain
SuperFamily	SSF46689	7.86E-29	86	181	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-15	87	136	IPR001005	SANT/Myb domain
CDD	cd00167	6.21E-14	90	134	No hit	No description
Pfam	PF13921	1.8E-16	91	149	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-24	94	142	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-14	139	187	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.474	139	189	IPR017930	Myb domain
CDD	cd00167	4.41E-11	142	182	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-19	143	188	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence Send to blast
MATGREVAIS EGGSSDGSSK KRPANRVSGP SRRSTKGQWT AEEDETLRKA VEHYNGKSWK 60 KIAECLGGRT DVQCLHRWQK VLDPALIKGP WTKEEDKKII ELVGKNGATK WTNIAKHLTG 120 RIGKQCRERW YHHLDPAIKK ENWTQEEELT LIHAHRIYGN KWAELTKFLP GRSDNAIKNH 180 WNSSVKKKEE SFMAAGLLSN FPGVPDFGQQ KLSVAFSSTQ QTSGENSHMR GGSEEDGVSE 240 CSQASTTLGC SQTSNDLTIK VESLNPIQEC HKNSLVDGNH SLSCNVGLDE IGDPMLSQSS 300 HIQISQANET SDLPSNDPAS DYLDIPSFEH LFYDEPNQCQ NSFPETQGQE FYQSSHDDFS 360 YINQYDMNPT EIASENKVVY EESESGSHRI HAMAKSPDKS QCCTPMEVQP ALVHGEKINN 420 GGAAYYEPPH LTNLDIPFVS CDLVQSGDFL EEEYSPLGIR QLLLMNSFSP LRLWDDSPEA 480 GLKSATKTFT RTPSILKKRH RDLLSPLSEK RVDKKQDSEL EQSSFSGLAQ DTSQFNDDRK 540 ENFDPVLKTD EKDQIEGLSC ERVLEDINRD PKAHLDANDA THAVTPVHQS SEDLADKEIE 600 KLILFSPRVQ IQAEKELYAK GYLNLTALPG NSTESDRYTA NEIISFHTHS LTPRSRGIMV 660 KKPFIDADSD KSSRSEGTPF KIFFESPTLD SPLFAKLFLP GPRIDTDISI EDIGYLITPD 720 SKSYDAIGIM KKLSEQTSKT FITGPNIASN TVSLNAGNGI SPTPDKHPEA DRHSGSDILM 780 ERRVLDFSDC GSPEKSK*

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence Send to blast

MATGREVAIS EGGSSDGSSK KRPANRVSGP SRRSTKGQWT AEEDETLRKA VEHYNGKSWK  60
KIAECLGGRT DVQCLHRWQK VLDPALIKGP WTKEEDKKII ELVGKNGATK WTNIAKHLTG  120
RIGKQCRERW YHHLDPAIKK ENWTQEEELT LIHAHRIYGN KWAELTKFLP GRSDNAIKNH  180
WNSSVKKKEE SFMAAGLLSN FPGVPDFGQQ KLSVAFSSTQ QTSGENSHMR GGSEEDGVSE  240
CSQASTTLGC SQTSNDLTIK VESLNPIQEC HKNSLVDGNH SLSCNVGLDE IGDPMLSQSS  300
HIQISQANET SDLPSNDPAS DYLDIPSFEH LFYDEPNQCQ NSFPETQGQE FYQSSHDDFS  360
YINQYDMNPT EIASENKVVY EESESGSHRI HAMAKSPDKS QCCTPMEVQP ALVHGEKINN  420
GGAAYYEPPH LTNLDIPFVS CDLVQSGDFL EEEYSPLGIR QLLLMNSFSP LRLWDDSPEA  480
GLKSATKTFT RTPSILKKRH RDLLSPLSEK RVDKKQDSEL EQSSFSGLAQ DTSQFNDDRK  540
ENFDPVLKTD EKDQIEGLSC ERVLEDINRD PKAHLDANDA THAVTPVHQS SEDLADKEIE  600
KLILFSPRVQ IQAEKELYAK GYLNLTALPG NSTESDRYTA NEIISFHTHS LTPRSRGIMV  660
KKPFIDADSD KSSRSEGTPF KIFFESPTLD SPLFAKLFLP GPRIDTDISI EDIGYLITPD  720
SKSYDAIGIM KKLSEQTSKT FITGPNIASN TVSLNAGNGI SPTPDKHPEA DRHSGSDILM  780
ERRVLDFSDC GSPEKSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	3e-64	36	188	6	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-64	36	188	6	158	MYB PROTO-ONCOGENE PROTEIN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	2e-95	Homeodomain-like protein

Link Out ? help Back to Top
Phytozome	Kaladp0095s0501.1.p