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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Kaladp0095s0414.3.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 228aa MW: 25955.5 Da PI: 9.1255 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0095s0414.3.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 80.2 | 1.4e-25 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
ri+n + rqvtfskRrng+lKKA+EL +LCdaev v++fsstgk+++++s
Kaladp0095s0414.3.p 10 RIDNPTSRQVTFSKRRNGLLKKANELAILCDAEVGVMVFSSTGKVHDFAS 59
8***********************************************86 PP
|
| 2 | K-box | 74.3 | 3.5e-25 | 78 | 169 | 8 | 98 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
+ ++++ + +q+e+a L++++++Lq+++R+l+ +dL+ L +k+Lq Le++L+ksl++iR++K++ll+++i el k + +++en +L +
Kaladp0095s0414.3.p 78 QlDSSSEIKFWQREAATLRQQLQSLQESHRQLMRDDLSGLGIKDLQDLETHLDKSLRSIRTTKDKLLMDEILELNAKGNIVRQENLELYQ 167
24688999********************************************************************************99 PP
K-box 97 kl 98
k+
Kaladp0095s0414.3.p 168 KV 169
96 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 30.684 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 5.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.28E-41 | 2 | 78 | No hit | No description |
| SuperFamily | SSF55455 | 4.97E-31 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 7.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 2.3E-23 | 82 | 169 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 13.488 | 85 | 181 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MGRGKVVIRR IDNPTSRQVT FSKRRNGLLK KANELAILCD AEVGVMVFSS TGKVHDFASS 60
SMTSVIDRYS KSKEEQQQLD SSSEIKFWQR EAATLRQQLQ SLQESHRQLM RDDLSGLGIK 120
DLQDLETHLD KSLRSIRTTK DKLLMDEILE LNAKGNIVRQ ENLELYQKVY GTKDVHAQCS 180
SITPISRHDL NIGEDAHVPV ELQLCQPQNQ NYETRTRATK LGRLYLQ*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
