PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0095s0189.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TCP | ||||||||
Protein Properties | Length: 372aa MW: 41140.5 Da PI: 7.3812 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.3 | 4.1e-32 | 52 | 160 | 2 | 109 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg. 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl+ ak i+el+ ++ ++ ++ +a++ s+s s + Kaladp0095s0189.1.p 52 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNVAKDDIDELPPLQIPPGFNFidQAHQAMLSSS--SYAa 139 689*************************************************************88888666443333333333..2222 PP TCP 89 kaaksaakskksqksaasaln 109 +++ a++++++q+++ s+ n Kaladp0095s0189.1.p 140 NQQVVATTPRSDQDQPGSKIN 160 333333344444444443333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 30.679 | 54 | 112 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.0E-29 | 54 | 171 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MIPRTRDGED FSDKLDNNDA NGGPSTHKAD STSSTAWLRS KDPRIVRVSR AFGGKDRHSK 60 VCTIRGLRDR RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLNVAKDDID ELPPLQIPPG 120 FNFIDQAHQA MLSSSSYAAN QQVVATTPRS DQDQPGSKIN ASWEDAPVDL HKSSFWTGSS 180 QPRSAKSSKH VATREIIMNE KPEIWTKRMM SDDHQADDHK LETLELGHGG GGGMQMGSSS 240 YNNFFTRATT SNHSSLPNLL HSVLPYGSYY HFDYPSNFSL SSSSSQSDNH PHPHQSNYNV 300 VPTGPHVLVC PPGMAASQSY FPATTTSSAS AAPMELDPRQ FINHFQILSP TQQQHHQSSL 360 HMSLDDVNKK R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-17 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-17 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022751945.1 | 6e-87 | transcription factor TCP13-like | ||||
STRING | EOY03699 | 9e-84 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 3e-48 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0095s0189.1.p |