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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0095s0049.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HB-other | ||||||||
Protein Properties | Length: 450aa MW: 50652.2 Da PI: 6.6669 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.9 | 4.6e-05 | 63 | 120 | 5 | 52 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkkl..........gLterqVkvWFqNrR 52 +ft++++ e+e+l ++n + ae + LA k ++ + V +WF+ rR Kaladp0095s0049.1.p 63 FRFTRDEVAEMENLMKENASLPAEVAKALALKFsktrhergqsNVRSDSVNNWFKKRR 120 58*******************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-4 | 59 | 128 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MFANRTTKQR SARTKAPHTL THLFRSTTTT FQSDAKFTPP LDRDHQQPLM PEPDHEMPSR 60 YQFRFTRDEV AEMENLMKEN ASLPAEVAKA LALKFSKTRH ERGQSNVRSD SVNNWFKKRR 120 HVISKANRAL SSVRSSRPSI LSTVAKIQQS PMPFQDKLQS EDEEASSKES SEEKSAEEGN 180 FGEGTLGPIV PSSTISNSVE ILDQMDVSPQ PLPSRENPKY EVDGVLARLA KFRTAQLSQH 240 TGSTPSLALS DLDMVNHAKA TLEKLEGISL VDFSSYRSDF DMAIRILVEK GSPSDVKKTE 300 LLLLQEQVHE IAKAHVQARE ELSKCNDFTE KLTEASETTD KLMKKAVLLE EKYNKIPQDL 360 SAVSRKISEL EAALVQAKTE LEIMRGDQDD VSNELAKLRE SLESVYKHMK SLKAEEAGII 420 KKRVETEEAL EKSTEEWVRL THLKAFTVI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 3e-07 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0095s0049.1.p |