PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0095s0009.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 398aa    MW: 43529.1 Da    PI: 7.2226
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0095s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.91.2e-392888262
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         +++++kcprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk++
  Kaladp0095s0009.1.p 28 PDHHVKCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKMK 88
                         57899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-272186IPR003851Zinc finger, Dof-type
PfamPF027013.0E-333086IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3013286IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103470IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSPDQTPAKV ATAAPKEGQD RKLRLPPPDH HVKCPRCDSP NTKFCYYNNY SLSQPRHFCK  60
TCRRYWTKGG ALRNVPIGGG CRKNKKMKQR LAGMSNSRDS SSCEIMGSTA GGLNFFQGFL  120
TPSMDFQLGS INTPPPPSTS MFPVVTGGVD TNFSLYEPHH SASQVNSSHH QSSSAVGTLM  180
GFNYLKPAAQ TGSGGDVLLG GIQQQLGSSS NNSMIVHSSL ASSIESLSSI NQELHWKLQQ  240
QRLAVLFSSG DHSEKRISGQ TDMGQVEEEH QFDHQQQPQS QAQKFLLQPI LFQNLETTKE  300
AHQYSAEESR IMEGAKVPEK SSLVENNGGG NNSTTEWFFD VNPYSNGSRS NNSGGLHNDD  360
SMINQAAVVN DDNPNNNYWN TGIQAWSDLQ HYNGALP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-33DNA binding with one finger 2.4