PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0094s0012.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 546aa MW: 59812 Da PI: 7.4983 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.3 | 1.6e-41 | 170 | 246 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rh+vC++hsk+++v+v+g+eqrfCqqCsrfh l efDe+krsCrrrLa+hnerrrk++ Kaladp0094s0012.2.p 170 TCQVYGCNKDLSSSKDYHKRHRVCDTHSKTAKVIVKGIEQRFCQQCSRFHLLAEFDEGKRSCRRRLAGHNERRRKPH 246 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.1E-33 | 165 | 232 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.368 | 168 | 245 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.27E-37 | 169 | 248 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-31 | 171 | 244 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 546 aa Download sequence Send to blast |
MQPHVMESWC QKGSVSGDLV YVPDSLGRHS KLLEVNGPVL GDNKLISEKG SDSIVEEVRY 60 STLSGNPFLT NFAWDVRFNK GSTGEQIAPT MSSPNLFLAD DGFSSKLPSP FSDSNCQEST 120 HIDLKLGRVA DYGGSKTFKL FPGSSMVFSA ESSTPIKRTR SAGLNSQTFT CQVYGCNKDL 180 SSSKDYHKRH RVCDTHSKTA KVIVKGIEQR FCQQCSRFHL LAEFDEGKRS CRRRLAGHNE 240 RRRKPHMGKH CGRSGRFQSY HGGAFNGISF TKTSSVCENM VPTNQLQLEK LGENGWNQHI 300 KLEFESNYNN LFGFLPANGN LLPKSSLPDV NLGKQYPCLY EGQANHLLRS VTTRSTGDDY 360 SHGMPGLPCS DLSYSVTSGG NQDSKVFCIE PAFNDFSTTM SPGALSLLSS QSQDSPNYST 420 GIPMTQASSI TGNPANCSGI PVSDTLLTAI PVASVNGMSH KLASCGLRSE ISNLCPILIP 480 DDRVGVHFED SELFHGLTAD TDRLSCEDEL TIDLLQLSSQ LQRVERQKQF VYATSHTTMN 540 TTARQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 171 | 244 | 11 | 84 | squamosa promoter binding protein-like 4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69170.1 | 4e-46 | SBP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0094s0012.2.p |