PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kaladp0093s0098.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 145aa MW: 16803.3 Da PI: 8.0721

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0093s0098.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	182.5	3e-56	1	143	230	373
GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319 +vksl+Pkvv+++eqe+++n+++F++rfle+l+yysa+f+s+++++pr+s+eri+vE ++l+r+ vn++aceg+er+erhe l+kW++r+ Kaladp0093s0098.1.p 1 MVKSLNPKVVTLIEQESNTNTTPFFNRFLETLDYYSAMFESIDVTMPRDSKERINVEMHCLARDMVNIIACEGKERVERHELLGKWKSRF 90 69************************************************************************************** PP GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++aGF++ pls+++++ + +ll+ ++ + y++ee++g+++lgWk+r+Lvs+SaW Kaladp0093s0098.1.p 91 TMAGFRQFPLSTYVNSVIGSLLKCYS-EHYTLEERDGAMLLGWKRRNLVSASAW 143 ******************9988.66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.0E-53	1	143	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	27.33	1	125	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MVKSLNPKVV TLIEQESNTN TTPFFNRFLE TLDYYSAMFE SIDVTMPRDS KERINVEMHC 60 LARDMVNIIA CEGKERVERH ELLGKWKSRF TMAGFRQFPL STYVNSVIGS LLKCYSEHYT 120 LEERDGAMLL GWKRRNLVSA SAWH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-23	1	144	228	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015898184.1	1e-89	chitin-inducible gibberellin-responsive protein 1-like
Refseq	XP_028126224.1	4e-90	chitin-inducible gibberellin-responsive protein 1-like
Swissprot	Q69VG1	8e-79	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A498K7Y7	5e-87	A0A498K7Y7_MALDO; Uncharacterized protein
STRING	XP_008365835.1	8e-88	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	2e-75	GRAS family protein

Link Out ? help Back to Top
Phytozome	Kaladp0093s0098.1.p

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]