PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0093s0044.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TCP | ||||||||
Protein Properties | Length: 269aa MW: 28368.4 Da PI: 10.7614 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.9 | 5.3e-36 | 40 | 137 | 4 | 89 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 ++ ++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ a++ + + +ss + Kaladp0093s0044.1.p 40 PRKASKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVAGTLQIPTTSSSRPdpkd 129 56789*********************************************************8888854432222222222222223333 PP TCP 89 .......k 89 + Kaladp0093s0044.1.p 130 llpgqveS 137 33333321 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.4E-30 | 43 | 137 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.063 | 44 | 98 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031347 | Biological Process | regulation of defense response |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MGSVQKPEFD RGDDVTVTAS TAVSMKEEPF AEATKPAVPP RKASKDRHTK VEGRGRRIRM 60 PATCAARIFQ LTRELGHKSD GETIRWLLEH AEPAIIAATG TGTVPAIAMS VAGTLQIPTT 120 SSSRPDPKDL LPGQVESKKR KRVGDAFPTA TDANAAITAS SSSLKTAFAP PQVVSSRPGI 180 VPMWAIPSNA VWMVPLATNQ QPIWALSPTP TPLVTLAARP ISSAAAPSAP PPPSSASTKT 240 TPSSSSTRTH PLRDLSLEIR DKTELHLL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015582875.2 | 3e-72 | LOW QUALITY PROTEIN: transcription factor TCP9 | ||||
Swissprot | Q9LT89 | 3e-58 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | F6I360 | 1e-73 | F6I360_VITVI; Uncharacterized protein | ||||
STRING | VIT_15s0048g01150.t01 | 2e-74 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 3e-57 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0093s0044.1.p |