 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kaladp0093s0004.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 247aa MW: 28281.2 Da PI: 8.4317 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0093s0004.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 99.8 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
Kaladp0093s0004.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
79***********************************************96 PP
|
| 2 | K-box | 93.9 | 2.7e-31 | 86 | 172 | 13 | 99 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
++++ +qe+ kLk ++e Lq++qR+llGedL +L+ keL+q+e+qLe slk+iRs+K++++l+q+ +lq ke++l e+nkaL++kle
Kaladp0093s0004.1.p 86 DTQNNYQEYLKLKGRVEALQKTQRNLLGEDLAQLNTKELEQIEHQLEISLKQIRSTKTQYMLDQLADLQLKEQNLLETNKALKQKLE 172
6899*********************************************************************************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 33.207 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.57E-45 | 2 | 78 | No hit | No description |
| SuperFamily | SSF55455 | 3.92E-33 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.9E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.9E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.9E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 3.9E-26 | 86 | 171 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.593 | 87 | 177 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60
PSIIKTLERY HQCSYSALEA SRPHFDTQNN YQEYLKLKGR VEALQKTQRN LLGEDLAQLN 120
TKELEQIEHQ LEISLKQIRS TKTQYMLDQL ADLQLKEQNL LETNKALKQK LEDNMERVQF 180
PQPWEEGAGH NNIPYIRLAT HSEAAFYQPI GFNPTMQLGY NNAGGNEVDG VNQPHAIGGL 240
MPGWFL*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ox0_A | 4e-28 | 89 | 173 | 19 | 103 | Developmental protein SEPALLATA 3 |
| 4ox0_B | 4e-28 | 89 | 173 | 19 | 103 | Developmental protein SEPALLATA 3 |
| 4ox0_C | 4e-28 | 89 | 173 | 19 | 103 | Developmental protein SEPALLATA 3 |
| 4ox0_D | 4e-28 | 89 | 173 | 19 | 103 | Developmental protein SEPALLATA 3 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB623163 | 7e-62 | AB623163.2 Pyrus pyrifolia var. culta PpMADS9-1 mRNA for MADS-box protein, complete cds. |
| GenBank | AJ001681 | 7e-62 | AJ001681.1 Malus domestica mRNA for MADS box protein MdMADS8. |
| GenBank | KC415237 | 7e-62 | KC415237.1 Malus domestica cultivar Fuji Beni Shogun MADS8-2 mRNA, complete cds. |
| GenBank | KC415238 | 7e-62 | KC415238.1 Malus domestica cultivar Fuji Beni Shogun MADS8-1 mRNA, complete cds. |
| GenBank | KP164002 | 7e-62 | KP164002.1 Pyrus pyrifolia clone PpSEP1-1 SEP1-like MADS-box protein mRNA, complete cds. |
| GenBank | KP164016 | 7e-62 | KP164016.1 Pyrus pyrifolia clone PpSEP1-2 SEP1-like MADS-box protein mRNA, complete cds. |
| GenBank | U78947 | 7e-62 | U78947.1 Malus domestica MADS-box protein 1 mRNA, complete cds. |
