PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0091s0104.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 244aa MW: 27278.7 Da PI: 6.2534 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.3 | 3.6e-10 | 177 | 243 | 7 | 74 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT- CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangL 74 +s v+k+++lv+p +f+e++ e++++tl+ +gr W+vk++ + s+ + ++ Wk+ + +++L Kaladp0091s0104.1.p 177 KSGVNKKCQLVFPLSFTEAYFTF--ENRDITLQAGDGRIWSVKYSLARESSVlLMVGSSWKQLAIDHDL 243 6889****************544..4458***************9977766669999*******99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-8 | 157 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.433 | 171 | 243 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.05E-11 | 176 | 243 | No hit | No description |
Pfam | PF02362 | 2.5E-8 | 176 | 243 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-8 | 177 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MRFGWEEGWS SLLRSSVDVT YGHYLVFDYD GKRAVFHVVA IGMSAIEIEH PAVGGIDDND 60 QDHGSGQLKR PRIELENDAD LGLRRSDKTQ APFFDLSRKS ARASQSSNLE GEKMRGNSPI 120 ASGDELVETD HTIVKIGRRC RNLTNDQTEK AILRTKAFQS EESICIIALQ PSYMNLKSGV 180 NKKCQLVFPL SFTEAYFTFE NRDITLQAGD GRIWSVKYSL ARESSVLLMV GSSWKQLAID 240 HDL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0091s0104.1.p |