PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0091s0095.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 86aa    MW: 9637.45 Da    PI: 10.8977
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0091s0095.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.4e-1415841182
                         HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS
                   B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82
                          +s++l lp +f++++g ++  +  ++l+ ++g +W+v++  +k+s++++l++GW +F+++ g+k +g f+vF
  Kaladp0091s0095.1.p 15 RSSKLLKLPGEFVKRCGAIN-VPGNVRLQVPTGAKWRVEV--KKCSEGVWLGRGWFKFAESFGIKyAGHFLVF 84
                         455899**********6664.3448***************..******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-13284IPR015300DNA-binding pseudobarrel domain
CDDcd100175.24E-12284No hitNo description
Gene3DG3DSA:2.40.330.104.2E-12384IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.785585IPR003340B3 DNA binding domain
PfamPF023621.9E-111584IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MKFFRMIITA DITARSSKLL KLPGEFVKRC GAINVPGNVR LQVPTGAKWR VEVKKCSEGV  60
WLGRGWFKFA ESFGIKYAGH FLVFD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-12B3 family protein