PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0089s0053.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 296aa MW: 32213 Da PI: 7.539 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 197 | 241 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH.HHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar.tmgkgRtlkqcksrw 44 r++WT eEd+ l+ avk+ G g+W+ I r ++ Rt+ q+ rw Kaladp0089s0053.2.p 197 RNPWTDEEDKELIAAVKKCGEGNWANILRgDFNGERTASQLSQRW 241 79*************************983344578888888888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.379 | 192 | 249 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-13 | 194 | 246 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-14 | 194 | 246 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-10 | 196 | 247 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-8 | 197 | 241 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.41E-15 | 199 | 246 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MTHKGSDSKR RKVEITLEDV YSCVLQRYTP SAVITLCLEI AQACGNNKID WKQLAKRTST 60 GITNAREYQM LWRHLAYGHH LNEKIEEGAE LLDDESDLEI DLEAVPQGNA EDLAGAHASV 120 QVLLASGPPC NSRMPNTLAA DANLAPNEKQ NGSTSKNAQI AVNGSLQTSS QNHLPQPYKS 180 IDGLDANGRN LPFRKKRNPW TDEEDKELIA AVKKCGEGNW ANILRGDFNG ERTASQLSQR 240 WAILKRQNKN LGIGGSNING QQLSQAHLAT RNALSAALNM PITLTSSVAT SSSFN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010664416.1 | 3e-89 | PREDICTED: uncharacterized protein LOC100245507 isoform X1 | ||||
Refseq | XP_010664417.1 | 2e-89 | PREDICTED: uncharacterized protein YMR317W isoform X2 | ||||
TrEMBL | F6H140 | 7e-88 | F6H140_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g07620.t01 | 1e-88 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.2 | 2e-46 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0089s0053.2.p |