PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0088s0099.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 405aa MW: 44891.2 Da PI: 8.5829 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 103.6 | 1.1e-32 | 98 | 202 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ Kaladp0088s0099.3.p 98 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGv 187 89****************************66677899*************************************************666 PP SS.SEE..EEEEE-S CS B3 86 gr.sefelvvkvfrk 99 g+ ++ +l++ ++r+ Kaladp0088s0099.3.p 188 GEaEKHRLFIDWRRR 202 88899999*999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-41 | 92 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-30 | 95 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.47E-25 | 96 | 185 | No hit | No description |
Pfam | PF02362 | 7.5E-30 | 98 | 202 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.579 | 98 | 203 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-24 | 98 | 203 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MEYGSKDEEY NNSIRHDFPA YGSGSSRDWF ASIKFAAADD SSDIMEASPL TANENNYDHE 60 HVRRVSDSHQ QQQHYAQQQA LGIGIGGQIC NIEREHMFDK VVTPSDVGKL NRLVIPKQHA 120 EKYFPLDSSS NEKGLLLNFE DLTGKSWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI 180 VSFQRGVGEA EKHRLFIDWR RRPITTLPID GSPFYSQFHR SVGGTPSWSP LLLRPPPARV 240 HPSISFQIPN HPGSHLFSTG YGGSSGNYMG QVFTNKTSVV YLTSPEGFGM VRGRAGEGIG 300 ERIPVVIQSV PVVQGKKVET AAKRLRLFGV NMECPASPDT STSDEFEILS SSSGIPVSST 360 TPRHHLSQLD PSSSTLFLPS STRMYNGTLV SNNGKMSKSL DLGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-67 | 93 | 203 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-67 | 93 | 203 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439872.1 | 1e-100 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Refseq | XP_012439873.1 | 1e-100 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Swissprot | O82799 | 3e-73 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A0D2Q216 | 3e-99 | A0A0D2Q216_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5SDP4 | 2e-99 | A0A2P5SDP4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G261100.1 | 1e-100 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 2e-67 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0088s0099.3.p |