PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0088s0027.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 535aa    MW: 56932.7 Da    PI: 6.2502
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0088s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93e-10197241144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHH.HHTTTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar.tmgkgRtlkqcksrw 44 
                          r++WT eEd+ l+ avk+ G g+W+ I r  ++  Rt+ q+  rw
  Kaladp0088s0027.1.p 197 RNPWTDEEDKELIAAVKKCGEGNWANILRgDFNGERTASQLSQRW 241
                          79*************************983344578888888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.08192249IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-13194246IPR009057Homeodomain-like
SuperFamilySSF466894.42E-13194246IPR009057Homeodomain-like
SMARTSM007175.4E-11196247IPR001005SANT/Myb domain
PfamPF002495.8E-8197241IPR001005SANT/Myb domain
CDDcd116603.66E-15199246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MTDKESDSKR RKVEITLDDL YCCVFQRYTP SAVITLYQEI AQACANKKID WKELSRRTST  60
GITNAREYQM LWRHLAYGHP LHEKIEEEAE LMDDESDLEI DLEAVPQGSA EDLADAHASV  120
QVLLASGPPC DSRMPNTLAA DANLAPNERQ NGTTSENVQI AGNGGLHVSS QKQLSQVYKS  180
TDGPDANGSN LPFRKKRNPW TDEEDKELIA AVKKCGEGNW ANILRGDFNG ERTASQLSQR  240
WAILKRRNKN LGLGGSNING QQLSQAHLAT RNALSVALNM PVTLTSSVAM SSSTVANSIT  300
AISPTEAFPS TLSVPQVSEG GALCAPLKNR VMLKKPPVPV KPTISSNSML QAAAVAAGAR  360
IATPEDAESL LKAAQAKNAV HIMHGGGAVI KSGSISPLTP HYSGVGMPGT SLSNSSIAMP  420
VVPKLGLPKS QLAMTQSSAT PNTLLEKHPA GPSTEVSTAK QTKATDDEVS MQSSTVPTKL  480
INDSEVADRP KDCHQLNASS TEAEEASHAS SLRSEGNNPV SNEIRSSESA EDGK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664416.11e-118PREDICTED: uncharacterized protein LOC100245507 isoform X1
TrEMBLF6H1401e-116F6H140_VITVI; Uncharacterized protein
STRINGVIT_18s0001g07620.t011e-117(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-59MYB_related family protein