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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0087s0171.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 363aa MW: 39374.7 Da PI: 8.6609 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.9 | 9.1e-41 | 67 | 142 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gC++dl+++k y++rhkvC +hsk++vv+v g+++rfCqqCsrfh+l efD+ekrsCrrrLa+hnerrrk+ Kaladp0087s0171.1.p 67 RCQVHGCNVDLTHVKAYYSRHKVCIMHSKSAVVTVGGVQKRFCQQCSRFHQLPEFDQEKRSCRRRLAGHNERRRKP 142 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.2E-31 | 63 | 129 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.188 | 65 | 142 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.37E-39 | 66 | 144 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.4E-31 | 68 | 141 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MAMSSSSITD SPNSSESLNG LTIGHKIYFE DVGVAAMPKS ANASSFPAAS PSKKMKPATS 60 RLQHPPRCQV HGCNVDLTHV KAYYSRHKVC IMHSKSAVVT VGGVQKRFCQ QCSRFHQLPE 120 FDQEKRSCRR RLAGHNERRR KPPPVSLLSS RYGTSSIFDT NNHGRGFLLD FSKNSGMPDM 180 DGHASSGDRR SILQTQVIGK FLMQPWTNSS ENPPSDHYFQ NAGGGASFPS QEIPRGGYYA 240 GGVSSESSCA LSLLSNEPWG STKNRAASDL GVLSDNLLNP QNSAVTNQIP SSSWGFNGNE 300 SAGVSHKMFS DSDLGLGHIP QNLAANLYSG EHGMGEQDGR QDMGPDLSSR FYESVQQMHW 360 SL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-28 | 68 | 141 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087743.1 | 1e-102 | squamosa promoter-binding-like protein 9 | ||||
Refseq | XP_012087744.1 | 1e-102 | squamosa promoter-binding-like protein 9 | ||||
Swissprot | A3C057 | 4e-52 | SPL17_ORYSJ; Squamosa promoter-binding-like protein 17 | ||||
TrEMBL | D6QZ29 | 2e-99 | D6QZ29_VITVI; Promoter-binding protein SPL9 | ||||
STRING | VIT_08s0007g06270.t01 | 1e-100 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 2e-44 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0087s0171.1.p |