PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0087s0077.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 265aa    MW: 30177.8 Da    PI: 9.1833
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0087s0077.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.51.5e-2947140188
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k ltpsdv+k++rlv+pk++ae++       g +  ++  l++ede g++W+++++y+ +s++yvltkGW+++vk++gL +gD+v F+
  Kaladp0087s0077.1.p  47 FEKPLTPSDVGKLNRLVIPKQYAEKYfplrspcGTNA-GESLLSFEDEFGKVWKFRYSYWTSSQSYVLTKGWSRYVKEKGLTAGDIVSFQ 135
                          99******************************86665.4459************************************************ PP

                          E-SSS CS
                   B3  84 ldgrs 88 
                          +++ s
  Kaladp0087s0077.1.p 136 RQQYS 140
                          55432 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-3638152IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-2844140IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-2646136No hitNo description
SMARTSM010195.0E-2247155IPR003340B3 DNA binding domain
PfamPF023621.3E-2647144IPR003340B3 DNA binding domain
PROSITE profilePS5086314.46647154IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSINPFCSSS SPSHNLDHPS KEACFLSVVQ DHTDSDGAAN IHRTLLFEKP LTPSDVGKLN  60
RLVIPKQYAE KYFPLRSPCG TNAGESLLSF EDEFGKVWKF RYSYWTSSQS YVLTKGWSRY  120
VKEKGLTAGD IVSFQRQQYS SGDTDKLFMT WRTRAHNGTL LLRRKYNTSG DYWSRTNFFP  180
AHYPYHPGRP MLNLWHNYSG GENKMVPISK NSRRLRLFGV NMELEDQSEP SDGIVSSQAS  240
ALLNRDASAA NQLHQFYPDL HVFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-42431584117B3 domain-containing transcription factor NGA1
5os9_B1e-42431584117B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275955.25e-58PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8RYD36e-46Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A438EK281e-56A0A438EK28_VITVI; B3 domain-containing protein
TrEMBLF6HKN63e-57F6HKN6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g02810.t015e-58(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.13e-48B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]