PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Kaladp0085s0076.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TCP

Protein Properties

Length: 219aa MW: 24383.7 Da PI: 8.0793

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0085s0076.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	95.6	9.5e-30	80	149	9	78
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaess 78 ++h kv gRdRRvR++ eca +F+L++ LG+++d++ti WLl+q+++ai ++tg+ s++++ ++s+ Kaladp0085s0076.1.p 80 PDRHKKVIGRDRRVRMPPECAEMVFQLTRDLGHKSDGETIKWLLKQSEAAIRAATGSgiaSTDPS---VTNSK 149 59*******************************************************55533333...11111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	20.567	79	133	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.6E-25	81	173	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MRSLKKLQLY CRPLLRIDAA ETSFAFGGTE NQRFAGELER QLEQDQVNEK EAVAENPVLP 60 KTTKMVSGKK DHPRRRSNIP DRHKKVIGRD RRVRMPPECA EMVFQLTRDL GHKSDGETIK 120 WLLKQSEAAI RAATGSGIAS TDPSVTNSKT ISDSSVVPCL IQPSAGVDLP QIQPPLEPPV 180 TLPPEQQEKK DQGTSYSNSF WLDVANMDLE QLGRDHFP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-25	TCP family protein

Link Out ? help Back to Top
Phytozome	Kaladp0085s0076.1.p