PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0085s0076.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 219aa MW: 24383.7 Da PI: 8.0793 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 95.6 | 9.5e-30 | 80 | 149 | 9 | 78 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaess 78 ++h kv gRdRRvR++ eca +F+L++ LG+++d++ti WLl+q+++ai ++tg+ s++++ ++s+ Kaladp0085s0076.1.p 80 PDRHKKVIGRDRRVRMPPECAEMVFQLTRDLGHKSDGETIKWLLKQSEAAIRAATGSgiaSTDPS---VTNSK 149 59*******************************************************55533333...11111 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 20.567 | 79 | 133 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.6E-25 | 81 | 173 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MRSLKKLQLY CRPLLRIDAA ETSFAFGGTE NQRFAGELER QLEQDQVNEK EAVAENPVLP 60 KTTKMVSGKK DHPRRRSNIP DRHKKVIGRD RRVRMPPECA EMVFQLTRDL GHKSDGETIK 120 WLLKQSEAAI RAATGSGIAS TDPSVTNSKT ISDSSVVPCL IQPSAGVDLP QIQPPLEPPV 180 TLPPEQQEKK DQGTSYSNSF WLDVANMDLE QLGRDHFP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69690.1 | 2e-25 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0085s0076.1.p |