PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0085s0073.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 504aa MW: 56853.6 Da PI: 7.9539 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.7 | 1.5e-09 | 393 | 440 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E e+lvd++ +G g+W+ I r++ + Rt+ +++++w+++l Kaladp0085s0073.1.p 393 WTLPEVERLVDGISHYGVGRWTEIQRHFFptsTYRTPVDLRDKWRNLL 440 ***************************999****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-12 | 383 | 442 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.333 | 385 | 444 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.18E-16 | 387 | 462 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-9 | 389 | 442 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.14E-19 | 393 | 441 | No hit | No description |
Pfam | PF00249 | 1.5E-6 | 393 | 440 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MSEGKGVPHR TRVRDVEDEG TEVEHLLAEP RNDHVSVDDF FRVDNKTQDV NISGCESCTR 60 EGGENTQKVQ GKLSDIGLDD ERNALIGPST ACEDYLLDTE FVDKASDCED FPREGLSFEK 120 SSPETHSSGY SGSESSAIGA SESTSTSIGK SRNRNGYNDH KALCELHSVS QRKCGCPNQK 180 KENTEKKSPI LYTSQNRKKL QSRLGFLSCS GTSDTDFTSF SDLHRTSEEA SLISNPRKRK 240 QFLSAGPSIE RINESEQGEP VKGSAESSMH RRSRKPPVRY IDEFSGSMSL LEEKRSTSGT 300 ARNRMLNVRT SSENDNRHGV FRSFKLARQG FYGRSPNKSS DTIRNICGQS KEFSPVTRLD 360 SDEETDSDEP EKVSPARKGS KICGDRRKHQ MIWTLPEVER LVDGISHYGV GRWTEIQRHF 420 FPTSTYRTPV DLRDKWRNLL KASNAWIQND QEEQDEESQK NGHRQLPKEI LHRISELGRL 480 YPYPVKRTPN HTPSPTPKRS SRK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 7e-23 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0085s0073.1.p |