 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kaladp0085s0056.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
C3H |
| Protein Properties |
Length: 223aa MW: 23428.6 Da PI: 9.4633 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0085s0056.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 23.2 | 1.2e-07 | 31 | 56 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
k ++C+ f Ck+Gd+C+FaHg+
Kaladp0085s0056.2.p 31 KSRICNKFNSAEGCKFGDKCHFAHGE 56
6689999999999***********96 PP
|
| 2 | zf-CCCH | 32.6 | 1.4e-10 | 189 | 213 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC +f + G C +GdrC+FaHg
Kaladp0085s0056.2.p 189 YKTKLCENFGK-GSCTFGDRCHFAHG 213
9**********.*************8 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 1.0E-12 | 27 | 59 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.16E-7 | 28 | 59 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.188 | 29 | 57 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.5E-5 | 31 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.011 | 31 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00322 | 3.4E-12 | 98 | 168 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 2.5E-16 | 98 | 168 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 14.424 | 99 | 163 | IPR004088 | K Homology domain, type 1 |
| SuperFamily | SSF54791 | 2.19E-15 | 99 | 178 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 3.80E-15 | 101 | 163 | No hit | No description |
| Pfam | PF00013 | 1.2E-11 | 102 | 165 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 2.0E-16 | 185 | 218 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.41E-9 | 187 | 219 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.8E-6 | 188 | 214 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.211 | 188 | 215 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.8E-8 | 189 | 213 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MSNMGPAAVP PTRGMTAPPP MKNGSAPPAV KSRICNKFNS AEGCKFGDKC HFAHGEWEIG 60
KPFAPSFDDH RGMGTTTGRG GRMMDPSFPA PPPSGFGVNA STKISVDASL AGAIIGKGGV 120
NSKQICRQTG VKLSIRDHES DPNLRNIELE GSFEQISQAS GMVRELIVNV SPMSSAAPTK 180
MRAHASSNYK TKLCENFGKG SCTFGDRCHF AHGAAELRTS TT*
|
