PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0085s0049.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 677aa    MW: 75854.5 Da    PI: 6.3621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0085s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.81.7e-5661331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv++yL++k++g+k++l +vi+evd+yk+ePwdLp k  + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgk
  Kaladp0085s0049.1.p   6 LPPGFRFHPTDEELVSYYLNRKINGRKIDL-DVIPEVDLYKCEPWDLPgKsLLPSKDMEWFFFSPRDRKYPNGSRTNRATKAGYWKATGK 94 
                          79****************************.9****************6435566888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v+s + ++vg+kktLv+y+grap+g++tdWvmheyrl
  Kaladp0085s0049.1.p  95 DRKVTS-QMREVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133
                          ******.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-633157IPR003441NAC domain
PROSITE profilePS5100561.3496157IPR003441NAC domain
PfamPF023651.1E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MSAVSLPPGF RFHPTDEELV SYYLNRKING RKIDLDVIPE VDLYKCEPWD LPGKSLLPSK  60
DMEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS QMREVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECHP SSNGLQDAYA LCRIFKKTAM GPKMDDNNAC SATASSALIQ  180
GYSGGQEQIQ GNHNNAYASI YHQQHHFDQY YSDNNMGGLA ASSSTSNLER HLAAPSTNDA  240
MDKNWMQFLS EDALDLTNSY PSFPSKVDIA LECARMQHRF SMPPLEVEDL APDDMTTIAT  300
TTTHNNNSSN EVGLLQGILS VAQVQQDIMA ENNNHNECNN MAQAWGGSGS HYSIHDTNDF  360
TFNTNHQAHN NDSSFRSCYN ENSSDAADIK CIGITGESEE ERQVTDRRMV ENLRWVGMSN  420
KHLEMNSVEE HKVIPIESIS NFRRSNLHQD DPHVGHGYQS DQLSDYTGLD DTEFNSFALS  480
LMNNDSNFFD ESHADEFPNY SAATEGVDKI EVTHGLFIAS HQMANTFFHQ IVPSTTVQVQ  540
LNPAMDNHSY QQVAPKLNTG TTSAHFTSYP VMGHCSALKR TGKSIINVIA ILLVCYSMSK  600
KSAMMHCNVK YPLTSDKCCA LLSKEREESS RCRATTMAKR TGSIQDYMGG SISNRVASRV  660
WACITIALAL CTFLVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-59116315174NAC domain-containing protein 19
3swm_B9e-59116315174NAC domain-containing protein 19
3swm_C9e-59116315174NAC domain-containing protein 19
3swm_D9e-59116315174NAC domain-containing protein 19
3swp_A9e-59116315174NAC domain-containing protein 19
3swp_B9e-59116315174NAC domain-containing protein 19
3swp_C9e-59116315174NAC domain-containing protein 19
3swp_D9e-59116315174NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-139NAC domain containing protein 28