PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0085s0044.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 652aa    MW: 72291.4 Da    PI: 7.8093
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0085s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-182777656
                         S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++t++q++ Le+lF+++ +p++++ ++++++l+L+ rq+k+WFqN+R+++k
  Kaladp0085s0044.1.p 27 RHTPQQIQYLETLFKECAHPDEKQQKQISSQLRLDPRQIKFWFQNKRTQMK 77
                         689*********************************************999 PP
2START118.87.3e-381573783206
                          HHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
                START   3 aeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                          a  a++el+k   +++p+W+      s+n+d + + f + +        + e +++s  vd  +  lv+ lld +  W   ++    +a 
  Kaladp0085s0044.1.p 157 AVGAMDELLKVLRSDKPLWTNNTgrYSLNRDCYEKVFLRPHHykrnisAKLESSKDSCDVDIKAIVLVNMLLDPS-MWLDLFPtlvtSAR 245
                          66799****************9998888888888888777668999999****************9999999999.88888888888*** PP

                          EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
                START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                          tl v+++g      g l+l    + alsplv+ R+f+f+Ry++q + ++wvi+dvS   ++++  +  v  + +lpSg++i+++++ghsk
  Kaladp0085s0044.1.p 246 TLHVVQTGmpgnrsGSLHLNHEIMHALSPLVApREFYFLRYCQQVEIDTWVIADVSYGIPREND-ENLVSNCLKLPSGCMIQDMPDGHSK 334
                          *******************************99******************************9.79999******************** PP

                          EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          vtwve v+++++   h  +r +v sgl++ga +w atl++ ce+
  Kaladp0085s0044.1.p 335 VTWVELVEVNDKAStHRFYRDIVTSGLVFGAERWIATLKQMCER 378
                          *********999888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-161373IPR009057Homeodomain-like
SuperFamilySSF466891.75E-161685IPR009057Homeodomain-like
PROSITE profilePS5007115.4991979IPR001356Homeobox domain
SMARTSM003893.5E-132183IPR001356Homeobox domain
CDDcd000862.85E-142779No hitNo description
PfamPF000461.7E-152777IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PROSITE profilePS5084838.644146381IPR002913START domain
SuperFamilySSF559617.0E-26148378No hitNo description
CDDcd088751.27E-86150377No hitNo description
SMARTSM002348.4E-18155378IPR002913START domain
PfamPF018521.8E-29159378IPR002913START domain
Gene3DG3DSA:3.30.530.202.8E-6214376IPR023393START-like domain
SuperFamilySSF559615.63E-8431611No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MDSGGANATG VDLEGTGSNR SNKNCNRHTP QQIQYLETLF KECAHPDEKQ QKQISSQLRL  60
DPRQIKFWFQ NKRTQMKTQL ERADNNSLRC QNERFKSENL AMRDALKNIL CPSCGGPPFG  120
KDEHHSNVEK LQLENAILRK ESETISDVEK SVMVETAVGA MDELLKVLRS DKPLWTNNTG  180
RYSLNRDCYE KVFLRPHHYK RNISAKLESS KDSCDVDIKA IVLVNMLLDP SMWLDLFPTL  240
VTSARTLHVV QTGMPGNRSG SLHLNHEIMH ALSPLVAPRE FYFLRYCQQV EIDTWVIADV  300
SYGIPRENDE NLVSNCLKLP SGCMIQDMPD GHSKVTWVEL VEVNDKASTH RFYRDIVTSG  360
LVFGAERWIA TLKQMCERAV LSNGVPANNQ GATLSAEGKM SVMDLSHRMV KTFCATLNMP  420
INKLAFGHVS ETNNSGVRVS TRPCTDPNKP QGMVVCMATS VWLPLCPQHV FAFFQDNNMR  480
SQWDFLSHGN PVKEIARAVS GRHTENNISI FQPVAHDKSH TVILQESLVD FLGYYLIFAP  540
LESTAVKMVV AGLNSSNTPV LPSGFVIVGD GRGVSTKDVN KTSSGKDGGS LLTVAFQMLL  600
SGTTYTKQKH MEVVADANSL IGSTVEKIKA SLTPSGSSKT VTPSESICTP P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367126.10.0PREDICTED: homeobox-leucine zipper protein HDG11-like
TrEMBLM5WQX60.0M5WQX6_PRUPE; Uncharacterized protein
STRINGXP_008227910.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.11e-161homeodomain GLABROUS 8