 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kaladp0084s0050.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
MYB |
| Protein Properties |
Length: 292aa MW: 33279.1 Da PI: 5.5589 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0084s0050.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 57 | 4.5e-18 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W+++Ede+l+ ++ ++G g+W++ ar+ g++Rt+k+c++rw+++l
Kaladp0084s0050.1.p 8 KGPWSEQEDEQLLSYISKYGHGHWEAMARKAGLNRTGKSCRLRWLNHL 55
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 45.8 | 1.4e-14 | 61 | 104 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T +E++++++++ ++G++ W++Ia++++ gR+++++k++w++
Kaladp0084s0050.1.p 61 RGNITLQEQLIILQLHSRWGNR-WAKIAECLP-GRSDNEIKNYWRT 104
7899******************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MATGGVKKGP WSEQEDEQLL SYISKYGHGH WEAMARKAGL NRTGKSCRLR WLNHLRPGVR 60
RGNITLQEQL IILQLHSRWG NRWAKIAECL PGRSDNEIKN YWRTRVQKQA KQLRCDVNSH 120
QFIEIVQHVW MPQLAERVQT QCKSSPTITQ ELECCETSSI SCGKLSNDSS NTHSDAAPLS 180
IPCQLSDPSS SHAYNNDSNR HVSDAADSDP AWRLGAGLEA DTYQMNVEKE TISCEDYCPW 240
SEQGLEVDKS QELLETAAWY DHDYCYSLEN LLNDDDMMIL CQQFLFDDHR A*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 2e-26 | 8 | 110 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
