PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0082s0111.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 431aa    MW: 47985.5 Da    PI: 8.8938
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0082s0111.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.2e-1684167694
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                          +++d ++++ l lp+kf++++g + ++   ++l+ ++  +W+v++  +k+s++++l+kGW +F+++ g++ g f+vF +d   + f  +v
  Kaladp0082s0111.1.p  84 ITADITTRSKLKLPRKFVKRYGANVPR--NVRLQVPTRAEWRVEV--KKNSDGVWLGKGWVKFAESLGIRYGHFLVFDYDVVhDVF--HV 167
                          5789999999***********888555..6***************..*******************************98653555..55 PP
2B359.94.3e-193454281499
                          T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          g + +p +f++++ +++    k+ tl++e+grsW vk+++ k + + ++t+GWk+F+ + +Lk+gD+++F+l+g  e  l+v +fr+
  Kaladp0082s0111.1.p 345 GPVLVPASFIQAYfNLN---IKDATLRTEDGRSWLVKYNVAKDRHESYFTSGWKKFAIDTDLKTGDVCLFELIGGAENALKVVIFRA 428
                          55678999**9996444...2489**************999999999**************************99777799999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.59E-1879180IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-1879173IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.43579173IPR003340B3 DNA binding domain
SMARTSM010193.9E-1480173IPR003340B3 DNA binding domain
CDDcd100173.89E-1780171No hitNo description
PfamPF023623.5E-1384160IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-19315427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-18321427IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-12323429IPR003340B3 DNA binding domain
PROSITE profilePS5086313.549332429IPR003340B3 DNA binding domain
PfamPF023626.6E-18344428IPR003340B3 DNA binding domain
CDDcd100172.55E-19349427No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MALLRARHSM NYGVGCQSCQ LLSTYYVTHA CNYIIVGHYD GSCLHNDGQK RSVTAGELTS  60
RITQQGHHYK EEGLASPMKF FRIITADITT RSKLKLPRKF VKRYGANVPR NVRLQVPTRA  120
EWRVEVKKNS DGVWLGKGWV KFAESLGIRY GHFLVFDYDV VHDVFHVLAL DMSAVEIEYP  180
TVSSIDDNEE EDLNGSRFAL KRPKVEDEDG DVVIVNKDGA NLGSKRRASA GQAPRGEPAS  240
KKATPSKVDQ NTCGNVIVRT EDEKLKTDRN TLQIQRGCYG RETMLNSEGR IRCVVQGRRN  300
GYGEQTKIAL ERAKAFKAEE PVCIITLPPS CVGQESPAGA ATNQGPVLVP ASFIQAYFNL  360
NIKDATLRTE DGRSWLVKYN VAKDRHESYF TSGWKKFAID TDLKTGDVCL FELIGGAENA  420
LKVVIFRALD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-17B3 family protein