PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0082s0109.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 244aa    MW: 27248.1 Da    PI: 6.5081
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0082s0109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.7e-131612331894
                          --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +p +f+e++ + + +   ++le ++  +W+v +  r++   +++++GWk+F + +gL +g  ++F+l++ ++  l v
  Kaladp0082s0109.1.p 161 VPPPFIEAYFNFEVR--NVILEAPDRMTWTVVH--RQSAHCIYFASGWKQFYEKHGLTVGGACLFELIRGKGNALQV 233
                          7999***99555455..6***************..888888**************************9877776666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM01019123102IPR003340B3 DNA binding domain
CDDcd100172.15E-72798No hitNo description
SuperFamilySSF1019366.28E-1029109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-750110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.04964102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-16143236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.8144239IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-15145233IPR015300DNA-binding pseudobarrel domain
CDDcd100175.62E-12149229No hitNo description
SMARTSM010193.8E-6151239IPR003340B3 DNA binding domain
PfamPF023626.8E-11160233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSGKKDDKSC SCLSTTVNSN IRIDVALSPI SRPKLPSKFV TRFGNQVPIT VTLQVPNDGG  60
VWLIGKGWAE FISSLSLGYA DFLMFEYDAM SVVFHVVVMG MSASEITYPA LATDDDPDDN  120
DDDVKPYSTM REGYNIGDSR ARAFKGNEPH FIISLQPTYL VPPPFIEAYF NFEVRNVILE  180
APDRMTWTVV HRQSAHCIYF ASGWKQFYEK HGLTVGGACL FELIRGKGNA LQVPIYFSNH  240
LRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-10B3 family protein