PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0080s0113.7.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 182aa    MW: 20999.9 Da    PI: 9.9392
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0080s0113.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.33.7e-271059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v++fsstgkly+++s
  Kaladp0080s0113.7.p 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMVFSSTGKLYDFAS 59
                         8***********************************************86 PP
2K-box88.31.5e-2978170898
                K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                          +  +++++ + +q+e++ L++++++Lq+++R+l+G+dL+ L +k+Lq+Le+qLeksl++iR++K++ll+++i+el +k + +++en +L 
  Kaladp0080s0113.7.p  78 QlmNSSSEIKFWQREANMLRQQLQSLQETHRQLMGDDLSGLGIKDLQNLENQLEKSLRSIRTTKDQLLIDEIQELNRKGNIIHQENLELY 167
                          13468999********************************************************************************** PP

                K-box  96 kkl 98 
                          +k+
  Kaladp0080s0113.7.p 168 QKV 170
                          997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.3161IPR002100Transcription factor, MADS-box
CDDcd002653.23E-44278No hitNo description
SuperFamilySSF554555.23E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-2883170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.94286176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRGKVVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMVFSS TGKLYDFAST  60
SMKSVIDRYN KSKEDQHQLM NSSSEIKFWQ REANMLRQQL QSLQETHRQL MGDDLSGLGI  120
KDLQNLENQL EKSLRSIRTT KDQLLIDEIQ ELNRKGNIIH QENLELYQKV SLIHDHVNQD  180
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-21182182MEF2C
5f28_B7e-21182182MEF2C
5f28_C7e-21182182MEF2C
5f28_D7e-21182182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219192.11e-102PREDICTED: MADS-box transcription factor 23 isoform X1
RefseqXP_010254615.11e-102PREDICTED: MADS-box transcription factor 23 isoform X1
RefseqXP_010254616.11e-103PREDICTED: MADS-box transcription factor 23 isoform X2
RefseqXP_021888090.11e-102MADS-box transcription factor 23-like isoform X3
SwissprotQ6EP492e-97MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A200QXU61e-102A0A200QXU6_9MAGN; Transcription factor
STRINGXP_008219192.11e-102(Prunus mume)
STRINGXP_010254615.11e-102(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-90AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]