PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0080s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TCP | ||||||||
Protein Properties | Length: 254aa MW: 26497.4 Da PI: 10.0245 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.3 | 6.6e-39 | 24 | 119 | 2 | 100 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i ++tg+++ +as+ a++ +ss++ g+a Kaladp0080s0025.1.p 24 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSILAATGSGTVPASALaAAGAAVSSQG----GRA 109 789*************************************************************9999988865555555554....222 PP TCP 91 aksaakskks 100 + +a ++++ Kaladp0080s0025.1.p 110 SVAAGLQHQQ 119 2222211111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-30 | 29 | 117 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.621 | 30 | 84 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGGTKPSDFH TAQKDVNNVV KKLAPKRSSN KDRHTKVEGR GRRIRMPALC AARIFQLTRE 60 LGHKSDGETI QWLLQQAEPS ILAATGSGTV PASALAAAGA AVSSQGGRAS VAAGLQHQQK 120 SNEPGGSGSG SGFGLGPSLW SHHHHHFGFP LTPPPPQSSS PSPPSASAAA SPESLNYLSK 180 LGLSGFDFTH ANPGQISFTS ILNGDQPLPG LELGLSQDAH NQHQPMSHIF HQMIHQQQEA 240 AVKDESGGSG QSR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304347.2 | 7e-73 | transcription factor TCP20-like | ||||
Refseq | XP_028218369.1 | 7e-73 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 4e-47 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A371HRB7 | 7e-72 | A0A371HRB7_MUCPR; Transcription factor TCP20 (Fragment) | ||||
STRING | GLYMA19G26560.1 | 3e-72 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 9e-39 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0080s0025.1.p |