PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0080s0023.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 23562.4 Da    PI: 6.6067
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0080s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.44.5e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krie+ks rqvtfskR+ g++KKA+ELSvLCd++vav ifss+gk+yeyss
  Kaladp0080s0023.1.p  9 KRIEDKSSRQVTFSKRKSGLMKKANELSVLCDVDVAVFIFSSKGKMYEYSS 59
                         79***********************************************96 PP
2K-box19.63.8e-08871511377
                K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                          + ++++ e a L   i+ ++  +R l     ++L++ eL qL q+Le+ l++ R kK++ + e+ 
  Kaladp0080s0023.1.p  87 TKQKCHAEDAGLSGSINLMRLINRSLDPTTDNPLNVPELTQLDQHLEDLLRHTRFKKEQAMWESA 151
                          45777888888888888888777888888889****************************98864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.894161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.89E-37273No hitNo description
SuperFamilySSF554551.07E-30281IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-588155IPR002487Transcription factor, K-box
PROSITE profilePS512976.53688176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGKVELKR IEDKSSRQVT FSKRKSGLMK KANELSVLCD VDVAVFIFSS KGKMYEYSSG  60
SSLKRILEHH QSPFEAENAA RKHVLETKQK CHAEDAGLSG SINLMRLINR SLDPTTDNPL  120
NVPELTQLDQ HLEDLLRHTR FKKEQAMWES ALATVEEEGH SNQRLKHFQG DDETGGRSIY  180
ELQNPFLESP SAHFISPDAV DDDSSPPRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-20187187MEF2 CHIMERA
6byy_B2e-20187187MEF2 CHIMERA
6byy_C2e-20187187MEF2 CHIMERA
6byy_D2e-20187187MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815444.12e-43PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
TrEMBLW0FFX14e-42W0FFX1_JUGRE; Flowering locus C-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.12e-35AGAMOUS-like 79