PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0079s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 699aa MW: 77827.5 Da PI: 6.0139 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 400.4 | 1.8e-122 | 309 | 683 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 v L++c+ea+ s++ ++++++a+l +lasp+g +p+ Rl+ayfte+La r +r +++l++ +p++ + +e+ ++++l++++sPi Kaladp0079s0080.1.p 309 VGDLIDCVEAIGSKNILAINHFIAKLGDLASPRGrTPIVRLVAYFTEGLAIRTSRIWPNLFHLATPRDLD-LADDEHGTSFRLLNQISPI 397 5689******************************99*************************999999987.6788999999********* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 +kf h+ N+ +l+a+eg+++vHiiDfdi+qGlQWp+++q+LasR+++p ++RiTgvg+ sk+el+etg+rLa fA ++++pfef++ Kaladp0079s0080.1.p 398 PKFIHFSSNEILLRAFEGKQKVHIIDFDIKQGLQWPSFFQSLASRSRPPIHVRITGVGE----SKHELNETGDRLAGFAGAMNLPFEFHP 483 ***********************************************************....9************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 v++rled++l++L+vk+gE++aVn+++qlh++l +s + +++L l++s++P+vvv++eqea++n +s+ +r++++l+yysa+fds Kaladp0079s0080.1.p 484 -VVDRLEDVRLWMLHVKEGESVAVNCMFQLHKTLYDSSGGAL--RDLLGLIRSTNPTVVVMAEQEASTNFQSLDTRVCNSLKYYSAIFDS 570 .7*******************************966655444..89******************************************** PP GRAS 271 leaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..... 354 l+ +lp+ s +rik E++ +grei+n++aceg+er erhet+ kW++ +++ GF+++++se++ q+++ll++++++ ++v+ + Kaladp0079s0080.1.p 571 LHCSLPSPSaPARIKTEEM-FGREIRNIIACEGSERYERHETFTKWKKLMSDGGFTSMRISEREILQIQMLLKMYSFHRFSVKTQsdeee 659 *******9999*******9.********************************************************888***94444556 PP GRAS 355 ....sgslvlgWkdrpLvsvSaWr 374 +l+l W+d+pL++vSaW+ Kaladp0079s0080.1.p 660 egapATALTLSWEDEPLYTVSAWT 683 677778899**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.138 | 282 | 654 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.1E-120 | 309 | 683 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MLAGCSSSTL LSPRHRLRIE ASKQFQACHF PLTNSMSTQR LDMQCSFPRR EAAISQPIRP 60 VGISVDQKPI ESRAGSCSLK QQNIHLPPLA TRPRLSLRGR RETEGGIWAE GNNLKRFAER 120 SPVDRSKKVK RKRGSSSKDV EQSEGAVEGD DDDDDDDASG LRLGQLDGRS FWFQSGFEVS 180 SYLPGLSQPE APFSLTVSQD EDRVCFVPSE VISPPPLPLT NNPWIDFGVS KITHLGDKNV 240 ETSHRQPAVR EPSESRTSYE SSLSLRLNEN PPPVHDSGNG SGNPHPLEGT PAQVVDESDE 300 EEQLGFELVG DLIDCVEAIG SKNILAINHF IAKLGDLASP RGRTPIVRLV AYFTEGLAIR 360 TSRIWPNLFH LATPRDLDLA DDEHGTSFRL LNQISPIPKF IHFSSNEILL RAFEGKQKVH 420 IIDFDIKQGL QWPSFFQSLA SRSRPPIHVR ITGVGESKHE LNETGDRLAG FAGAMNLPFE 480 FHPVVDRLED VRLWMLHVKE GESVAVNCMF QLHKTLYDSS GGALRDLLGL IRSTNPTVVV 540 MAEQEASTNF QSLDTRVCNS LKYYSAIFDS LHCSLPSPSA PARIKTEEMF GREIRNIIAC 600 EGSERYERHE TFTKWKKLMS DGGFTSMRIS EREILQIQML LKMYSFHRFS VKTQSDEEEE 660 GAPATALTLS WEDEPLYTVS AWTPTDAPGA SSSFSQRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-60 | 315 | 684 | 26 | 380 | Protein SCARECROW |
5b3h_A | 8e-60 | 315 | 684 | 25 | 379 | Protein SCARECROW |
5b3h_D | 8e-60 | 315 | 684 | 25 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017972132.1 | 0.0 | PREDICTED: scarecrow-like protein 28 | ||||
Swissprot | Q9CAN3 | 0.0 | SCL28_ARATH; Scarecrow-like protein 28 | ||||
TrEMBL | A0A061G628 | 0.0 | A0A061G628_THECC; GRAS family transcription factor | ||||
STRING | EOY24632 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0079s0080.1.p |