PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kaladp0079s0030.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 252aa MW: 27681.2 Da PI: 8.375

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0079s0030.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.7e-19	83	137	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq +Lee+F+++++++ +++ LAk+l+L +rqV vWFqNrRa+ k Kaladp0079s0030.2.p 83 RKKLRLTREQSAVLEEMFKEHNTLNPKQKVALAKQLDLRTRQVEVWFQNRRARTK 137 678899***********************************************98 PP
2	HD-ZIP_I/II	125.2	2.9e-40	83	172	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl++eq+++LEe+F+e+++L+p++Kv+la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr + Kaladp0079s0030.2.p 83 RKKLRLTREQSAVLEEMFKEHNTLNPKQKVALAKQLDLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-A 171 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Kaladp0079s0030.2.p 172 L 172 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	4.3E-7	22	53	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	4.0E-18	63	137	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.82E-18	76	140	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	79	139	IPR001356	Homeobox domain
SMART	SM00389	6.1E-16	81	143	IPR001356	Homeobox domain
Pfam	PF00046	2.3E-16	83	137	IPR001356	Homeobox domain
CDD	cd00086	3.74E-15	83	140	No hit	No description
PROSITE pattern	PS00027	0	114	137	IPR017970	Homeobox, conserved site
SMART	SM00340	1.9E-26	139	182	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.9E-11	139	173	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MVILCADRSA YLRRGVALVA AIPVVDLADD EIDVSSPNDS TVSSLSGKRS DREANNVNVN 60 GDENEAERAS SSGKMSDEED GGRKKLRLTR EQSAVLEEMF KEHNTLNPKQ KVALAKQLDL 120 RTRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCENLTEENR RLQKEVQELR ALKLSPQMYM 180 QINPATTLTM CPSCERVSSS AASAGAGSGH VAVGAGANGV RVNNAVGSQV QQPTIQLNSP 240 WAPLPVHHRK L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011031821.1	7e-91	PREDICTED: homeobox-leucine zipper protein HAT3-like
Swissprot	P46602	9e-80	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A200Q2L9	6e-94	A0A200Q2L9_9MAGN; Homeobox domain
STRING	Aquca_067_00037.1	3e-90	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	1e-81	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Kaladp0079s0030.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]